miRNA display CGI


Results 41 - 60 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 32214 0.68 0.760455
Target:  5'- -aUGGCuCGCAAcGCGGCccaGAcgGCCaGGUCCc -3'
miRNA:   3'- gaGCCG-GCGUU-CGCCG---CU--UGG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 33640 0.67 0.803665
Target:  5'- --aGGCCGUggagGGGCGGCcagcaGAGCgGGaUCCa -3'
miRNA:   3'- gagCCGGCG----UUCGCCG-----CUUGgCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 34520 0.7 0.674176
Target:  5'- -gCGGCCGCGggccgagacgcgcgAGCGGCGAcagaguucgGCCuuguGGUCg -3'
miRNA:   3'- gaGCCGGCGU--------------UCGCCGCU---------UGG----CCAGg -5'
14641 3' -59.8 NC_003521.1 + 35001 0.67 0.815191
Target:  5'- --gGGCCaGCGAGCgcuugcgucgugcccGGCGGACgCGGUUg -3'
miRNA:   3'- gagCCGG-CGUUCG---------------CCGCUUG-GCCAGg -5'
14641 3' -59.8 NC_003521.1 + 38233 0.66 0.879088
Target:  5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3'
miRNA:   3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 38313 0.66 0.885649
Target:  5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3'
miRNA:   3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 40173 0.7 0.667502
Target:  5'- -gCGGCgCGU---UGGCGuGCCGGUCCa -3'
miRNA:   3'- gaGCCG-GCGuucGCCGCuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 40430 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 41096 0.67 0.843475
Target:  5'- -gCGGaCCGCucaacGCGGUGGuGCUGGUCa -3'
miRNA:   3'- gaGCC-GGCGuu---CGCCGCU-UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 42385 0.69 0.695986
Target:  5'- -aCGGCCaaucGCGuggcguaggAGUGGCGAACCGGcgUCa -3'
miRNA:   3'- gaGCCGG----CGU---------UCGCCGCUUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 42612 0.71 0.610038
Target:  5'- -aCGGCCGCcGGCGGC--GCCGucgCCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCca-GG- -5'
14641 3' -59.8 NC_003521.1 + 43841 0.74 0.428295
Target:  5'- -cCGGCCGCGGGCccgucacaGGCGccccGGCCGGcUCCc -3'
miRNA:   3'- gaGCCGGCGUUCG--------CCGC----UUGGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 44763 0.67 0.820045
Target:  5'- -aCGGaCCGCGgaaGGCGGCcgguGCUGGcCCu -3'
miRNA:   3'- gaGCC-GGCGU---UCGCCGcu--UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 45195 0.68 0.77809
Target:  5'- cCUCGgaGCUGCAgcaacgcgaccAGCuGGCGGGCCGG-CUg -3'
miRNA:   3'- -GAGC--CGGCGU-----------UCG-CCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 46417 0.67 0.842718
Target:  5'- cCUCGGCCuccucguGCGAGgguaucCGGCGGggcugcggggGCUGGUCg -3'
miRNA:   3'- -GAGCCGG-------CGUUC------GCCGCU----------UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 50844 0.66 0.885649
Target:  5'- -aCGGCgGCuuuuuGagaaGGUGGACgGGUCCc -3'
miRNA:   3'- gaGCCGgCGuu---Cg---CCGCUUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 52186 0.66 0.850216
Target:  5'- -gUGuGCCGCcgGGGCGGCGAGCucaucagacaguaCGGgggCCg -3'
miRNA:   3'- gaGC-CGGCG--UUCGCCGCUUG-------------GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 52318 0.68 0.77809
Target:  5'- -cCGGCCuccucGUAucucGGCGGCGGACCcaGGcCCa -3'
miRNA:   3'- gaGCCGG-----CGU----UCGCCGCUUGG--CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 52686 0.66 0.885649
Target:  5'- -cCGGCaGCGucGGCGGUGccAGCCGcUCCa -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGC--UUGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 52759 0.67 0.815191
Target:  5'- --aGGCCGCAcucguuaaccaGgauggagauguccagGCGGCGGugCGGcUCCa -3'
miRNA:   3'- gagCCGGCGU-----------U---------------CGCCGCUugGCC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.