miRNA display CGI


Results 21 - 40 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 19180 0.7 0.638791
Target:  5'- -cUGGCuacacCGCGGGCGGCGAGCUaaGG-CCa -3'
miRNA:   3'- gaGCCG-----GCGUUCGCCGCUUGG--CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 19556 0.69 0.724047
Target:  5'- uCUUGGCCGCGugcuCGGUGGucuucaccACCacGGUCCa -3'
miRNA:   3'- -GAGCCGGCGUuc--GCCGCU--------UGG--CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 22198 0.66 0.866093
Target:  5'- -gUGGCCGCuuaccgccgcgcgcuGGCGGCcGAACCGuaCCu -3'
miRNA:   3'- gaGCCGGCGu--------------UCGCCG-CUUGGCcaGG- -5'
14641 3' -59.8 NC_003521.1 + 23098 0.67 0.803665
Target:  5'- -gUGGCCG--GGCGGgGGGCCGGg-- -3'
miRNA:   3'- gaGCCGGCguUCGCCgCUUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 23216 0.66 0.875058
Target:  5'- -gCGGCCGaGAcgccccugcugguccGgGGCGGACCcggGGUCCu -3'
miRNA:   3'- gaGCCGGCgUU---------------CgCCGCUUGG---CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 24431 0.68 0.79442
Target:  5'- -aCGG-CGCAGGggcCGGCGGGCUcggaacaGGUCCg -3'
miRNA:   3'- gaGCCgGCGUUC---GCCGCUUGG-------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 25572 0.69 0.74242
Target:  5'- -gCGGCCGCGGGgacaGGUGGGCUuGUUCa -3'
miRNA:   3'- gaGCCGGCGUUCg---CCGCUUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 25637 0.66 0.865391
Target:  5'- -cUGGCgCGUgaccacgacaucAGGCGGCaGAucguGCUGGUCCa -3'
miRNA:   3'- gaGCCG-GCG------------UUCGCCG-CU----UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 26108 0.72 0.54372
Target:  5'- gUCGGCCaGguAGaguuCGGCGGGCCGGcugcuUCCg -3'
miRNA:   3'- gAGCCGG-CguUC----GCCGCUUGGCC-----AGG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 27456 0.78 0.264358
Target:  5'- uUCGGCCGUGAGCgccaGGCuGGCCaGGUCCg -3'
miRNA:   3'- gAGCCGGCGUUCG----CCGcUUGG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 27703 0.72 0.552139
Target:  5'- -gCGGCCGCAccacgccacacccAGCGcGuCGAGCCGcGUCUc -3'
miRNA:   3'- gaGCCGGCGU-------------UCGC-C-GCUUGGC-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 27879 0.67 0.820045
Target:  5'- cCUCGaCCGCAuggaGGCGGGCUuGUCCu -3'
miRNA:   3'- -GAGCcGGCGUucg-CCGCUUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 28852 0.67 0.803665
Target:  5'- -aCGaGCUGC-GGCGGCGcGGCaCGGUCg -3'
miRNA:   3'- gaGC-CGGCGuUCGCCGC-UUG-GCCAGg -5'
14641 3' -59.8 NC_003521.1 + 29761 0.71 0.629203
Target:  5'- gUCGucGCCGCGAGCGaCGAACgaGGUCa -3'
miRNA:   3'- gAGC--CGGCGUUCGCcGCUUGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 30225 0.67 0.820045
Target:  5'- -cCGGCCGUuGGCGucGCGcuGCaGGUCCg -3'
miRNA:   3'- gaGCCGGCGuUCGC--CGCu-UGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 30854 0.66 0.858263
Target:  5'- uCUgGGCCGUccGCGGCaacuucuccGAACCcuuuccccgGGUCUa -3'
miRNA:   3'- -GAgCCGGCGuuCGCCG---------CUUGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 30971 0.69 0.705397
Target:  5'- gCUCGGCaCGCAgcagcAGCuGCGGAUCGGg-- -3'
miRNA:   3'- -GAGCCG-GCGU-----UCGcCGCUUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 31081 0.67 0.811926
Target:  5'- -cCGGCCaacaGCGacgacGGCGGCG-GCCGGUa- -3'
miRNA:   3'- gaGCCGG----CGU-----UCGCCGCuUGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 31291 0.67 0.820045
Target:  5'- -cCGGgCGCAuaaccgcggcAGCGGCGA--CGGUCa -3'
miRNA:   3'- gaGCCgGCGU----------UCGCCGCUugGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.