miRNA display CGI


Results 21 - 40 of 311 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 217337 0.74 0.420012
Target:  5'- -aCGGUgGCGGaCGGCG-GCCGGUCCu -3'
miRNA:   3'- gaGCCGgCGUUcGCCGCuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 216839 0.66 0.872334
Target:  5'- --aGGUCGCAGcccGCGGCGGacgACUGuUCCa -3'
miRNA:   3'- gagCCGGCGUU---CGCCGCU---UGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 214812 0.67 0.843475
Target:  5'- gUCGGgCGCcgggcGCGGCGAcGgCGGuUCCa -3'
miRNA:   3'- gAGCCgGCGuu---CGCCGCU-UgGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 213570 0.7 0.686529
Target:  5'- -gUGGCCGCAucauCGGCGAGCCcGUgCu -3'
miRNA:   3'- gaGCCGGCGUuc--GCCGCUUGGcCAgG- -5'
14641 3' -59.8 NC_003521.1 + 213138 0.66 0.885649
Target:  5'- -gCGGCCGCA----GCGAACUgaagacguuGGUCCa -3'
miRNA:   3'- gaGCCGGCGUucgcCGCUUGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 211341 0.68 0.77809
Target:  5'- -gCGGgCGCGAGUGGUuggggucccgcaGcAGCCGGUCg -3'
miRNA:   3'- gaGCCgGCGUUCGCCG------------C-UUGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 211062 0.68 0.757773
Target:  5'- cCUCGuucGUCGCucGCGGCGAcgacgauccuuccuGCCuGUCCg -3'
miRNA:   3'- -GAGC---CGGCGuuCGCCGCU--------------UGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 209562 0.66 0.850956
Target:  5'- -gUGGCgGCGacGGUGGCGGG--GGUCCg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 209038 0.7 0.667502
Target:  5'- aCUCGGCCuucuGCGAGUGcggcgacuggcGCGAccccgauguGCCGGUCg -3'
miRNA:   3'- -GAGCCGG----CGUUCGC-----------CGCU---------UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 208938 0.66 0.865391
Target:  5'- -cUGuGCCGC-GGCcuGGCGGugCGGUaCCg -3'
miRNA:   3'- gaGC-CGGCGuUCG--CCGCUugGCCA-GG- -5'
14641 3' -59.8 NC_003521.1 + 207908 0.71 0.581415
Target:  5'- -cCGGCCGCcaccuacgccggGGGCGGCGGGCaCGG-Cg -3'
miRNA:   3'- gaGCCGGCG------------UUCGCCGCUUG-GCCaGg -5'
14641 3' -59.8 NC_003521.1 + 207603 0.73 0.506859
Target:  5'- -cCGGCUGCAagauccgucugGGCGGCucGCCGG-CCu -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGcuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 204891 0.71 0.610038
Target:  5'- aUUGGCCGC--GCGGCGGGaCGGUggCCg -3'
miRNA:   3'- gAGCCGGCGuuCGCCGCUUgGCCA--GG- -5'
14641 3' -59.8 NC_003521.1 + 204776 0.7 0.648376
Target:  5'- gUCGGCgGCGGGCuuacGGCGAAgaGGgCCa -3'
miRNA:   3'- gAGCCGgCGUUCG----CCGCUUggCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 203010 0.68 0.749678
Target:  5'- gCUCGcCCGCcaagacggguucGGCGGUGAuaGCCGGUgCCa -3'
miRNA:   3'- -GAGCcGGCGu-----------UCGCCGCU--UGGCCA-GG- -5'
14641 3' -59.8 NC_003521.1 + 202527 0.66 0.879088
Target:  5'- cCUCGGCCuGCAAcaacuGCcGUGAaaacACCGGcaUCCg -3'
miRNA:   3'- -GAGCCGG-CGUU-----CGcCGCU----UGGCC--AGG- -5'
14641 3' -59.8 NC_003521.1 + 201665 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 201548 0.66 0.872334
Target:  5'- -cCGGCgaCGUGGcGCGGCuguAUCGGUCCa -3'
miRNA:   3'- gaGCCG--GCGUU-CGCCGcu-UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 200300 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 200105 0.68 0.77809
Target:  5'- aUCGGUCuCGAGCGccGCGAugUGGUgCa -3'
miRNA:   3'- gAGCCGGcGUUCGC--CGCUugGCCAgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.