miRNA display CGI


Results 21 - 40 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 101963 0.66 0.875058
Target:  5'- uCUCGGggugcgagaugggguCCaGCAGGCGGUGcAGCUGcguGUCCa -3'
miRNA:   3'- -GAGCC---------------GG-CGUUCGCCGC-UUGGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 130753 0.66 0.865391
Target:  5'- gUCGGCgggCGCGAGCGcCGcGCCGGg-- -3'
miRNA:   3'- gAGCCG---GCGUUCGCcGCuUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 118203 0.66 0.850956
Target:  5'- --gGGCCGcCGAGCGcGCGGccGCCGccGUCg -3'
miRNA:   3'- gagCCGGC-GUUCGC-CGCU--UGGC--CAGg -5'
14641 3' -59.8 NC_003521.1 + 122110 0.66 0.850956
Target:  5'- -gCGGCUGC-AGCGGCGucucGCCGcGgCUg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCu---UGGC-CaGG- -5'
14641 3' -59.8 NC_003521.1 + 74791 0.66 0.865391
Target:  5'- -aCGGCgGCAgcgguAGCGGCGAGacgcggacggaCGGcgCCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCUUg----------GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 86347 0.66 0.858263
Target:  5'- --aGGCCGU--GCaGCGAGCCGauguaGUCCu -3'
miRNA:   3'- gagCCGGCGuuCGcCGCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 126567 0.66 0.84873
Target:  5'- --aGGCCGUggGCaGCGGgaagccgccgucguGCCGGUg- -3'
miRNA:   3'- gagCCGGCGuuCGcCGCU--------------UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 130303 0.66 0.850956
Target:  5'- --aGGCCGCGGcGCcGCGcauCCaGGUCCa -3'
miRNA:   3'- gagCCGGCGUU-CGcCGCuu-GG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 142925 0.66 0.850956
Target:  5'- gUCGGCguUGCAgcAGCGGCGGuCagGGUCa -3'
miRNA:   3'- gAGCCG--GCGU--UCGCCGCUuGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 173465 0.66 0.865391
Target:  5'- -cCGGCgGU-AGUGGCGucgauACCGG-CCu -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCu----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 92126 0.66 0.879088
Target:  5'- -cCGGgUGCGguucgGGCGGCGGGgcuucCCGGcUCCu -3'
miRNA:   3'- gaGCCgGCGU-----UCGCCGCUU-----GGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 168539 0.66 0.879088
Target:  5'- -gCGGCCaGCGcGGCGGCGGcGCUGG-Cg -3'
miRNA:   3'- gaGCCGG-CGU-UCGCCGCU-UGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 116464 0.66 0.879088
Target:  5'- -gCGGCCGUGgugggacacguGGCGGCGAugaagaGcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGCUugg---C-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 127083 0.66 0.871648
Target:  5'- gUCaGCCGCcagcaggaacgucGGGCGGUaGAAgaGGUCCa -3'
miRNA:   3'- gAGcCGGCG-------------UUCGCCG-CUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 129040 0.66 0.872334
Target:  5'- gUCGGCCGUguucuuGAGCGcGCGcagcACCGuGUgCa -3'
miRNA:   3'- gAGCCGGCG------UUCGC-CGCu---UGGC-CAgG- -5'
14641 3' -59.8 NC_003521.1 + 63871 0.66 0.879088
Target:  5'- -aCGGUgGacgAGGCGGCGcGCCGGgagCUg -3'
miRNA:   3'- gaGCCGgCg--UUCGCCGCuUGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 116775 0.66 0.879088
Target:  5'- gUgGGCCGCcgccGCGGCacGCUGG-CCg -3'
miRNA:   3'- gAgCCGGCGuu--CGCCGcuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 92272 0.66 0.879088
Target:  5'- -gCuGCCGCuacCGGCcgGAGCCGGUCg -3'
miRNA:   3'- gaGcCGGCGuucGCCG--CUUGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 218074 0.66 0.865391
Target:  5'- uCUCGaaGCacaGCgAGGCGGCGGcGCCGGUg- -3'
miRNA:   3'- -GAGC--CGg--CG-UUCGCCGCU-UGGCCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.