miRNA display CGI


Results 21 - 40 of 311 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 190541 0.74 0.453712
Target:  5'- -gCGGCgGCAgcAGCGGCGGACCcGG-CUg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUGG-CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 17764 0.74 0.453712
Target:  5'- -cUGGCCGUAccgccGGCGGCGGA-CGGUCa -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCGCUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 71506 0.74 0.462366
Target:  5'- -cCGGCCGCGAcGCuGCGAccgacGCCGG-CCg -3'
miRNA:   3'- gaGCCGGCGUU-CGcCGCU-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 17483 0.73 0.471104
Target:  5'- -aCGGCacCGguAGCGGCGccGCCGGUCa -3'
miRNA:   3'- gaGCCG--GCguUCGCCGCu-UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 101855 0.73 0.479927
Target:  5'- -gCGGCaGCAGGCGGCGGuacaugaaguaGCCGucGUCCu -3'
miRNA:   3'- gaGCCGgCGUUCGCCGCU-----------UGGC--CAGG- -5'
14641 3' -59.8 NC_003521.1 + 88662 0.73 0.479927
Target:  5'- --gGGCCGcCAGGuCGGUGGGCCGGcggCCc -3'
miRNA:   3'- gagCCGGC-GUUC-GCCGCUUGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 72983 0.73 0.479927
Target:  5'- -gCGGCCGCGGGgGGCcuGGCCGcUCCu -3'
miRNA:   3'- gaGCCGGCGUUCgCCGc-UUGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 150350 0.73 0.479927
Target:  5'- uCUCGGCCGaggucuGCGuGCGGACCguGGUCg -3'
miRNA:   3'- -GAGCCGGCguu---CGC-CGCUUGG--CCAGg -5'
14641 3' -59.8 NC_003521.1 + 110340 0.73 0.488829
Target:  5'- -gCGGCCGCGcucGCGGUGuAGCUGGgCCa -3'
miRNA:   3'- gaGCCGGCGUu--CGCCGC-UUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 148431 0.73 0.488829
Target:  5'- -gCGGCCGCGccGGCGGCuccagggguGGCCGGUgCg -3'
miRNA:   3'- gaGCCGGCGU--UCGCCGc--------UUGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 170293 0.73 0.488829
Target:  5'- gUCGGCCGgcCGAGC-GCGAGgCGGUCa -3'
miRNA:   3'- gAGCCGGC--GUUCGcCGCUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 145893 0.73 0.496906
Target:  5'- --aGGCCGCcGGCGGCGGgagcagcGgCGGUUCg -3'
miRNA:   3'- gagCCGGCGuUCGCCGCU-------UgGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 103673 0.73 0.497807
Target:  5'- -gCGGCCGCGgccauGGCgGGCGAGuCCGagcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----UCG-CCGCUU-GGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 207603 0.73 0.506859
Target:  5'- -cCGGCUGCAagauccgucugGGCGGCucGCCGG-CCu -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGcuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 240657 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 108 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 40430 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 218617 0.73 0.5105
Target:  5'- uUCGGCCGCcAGCGcGCGGcgguaagcggccacgGCCGGcggcgCCu -3'
miRNA:   3'- gAGCCGGCGuUCGC-CGCU---------------UGGCCa----GG- -5'
14641 3' -59.8 NC_003521.1 + 168992 0.72 0.525167
Target:  5'- gUCGGUCGCGGGaGGCGGGCgaCGGggCCg -3'
miRNA:   3'- gAGCCGGCGUUCgCCGCUUG--GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 116887 0.72 0.525167
Target:  5'- -gCGGCUGC-GGCGGCGcGCCGG-Cg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCuUGGCCaGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.