miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 240657 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 240621 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 238540 0.66 0.885649
Target:  5'- gUCGGCCaGCGGGUagaGGUG-GCC-GUCCu -3'
miRNA:   3'- gAGCCGG-CGUUCG---CCGCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 238461 0.66 0.879088
Target:  5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3'
miRNA:   3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 236465 1.12 0.00167
Target:  5'- gCUCGGCCGCAAGCGGCGAACCGGUCCg -3'
miRNA:   3'- -GAGCCGGCGUUCGCCGCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 234580 0.68 0.795267
Target:  5'- uCUCGG-CGUccGCGG-GAgcGCCGGUCUc -3'
miRNA:   3'- -GAGCCgGCGuuCGCCgCU--UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 234431 0.66 0.8539
Target:  5'- gUCGccGCCGCGGuagcuGCGGCGccccuccgcgaccccGACCGGcCCc -3'
miRNA:   3'- gAGC--CGGCGUU-----CGCCGC---------------UUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 232868 0.76 0.367865
Target:  5'- -cCGGCCGCGAcaccGCGGCGAucuggaggaugagcuACgCGGUCUg -3'
miRNA:   3'- gaGCCGGCGUU----CGCCGCU---------------UG-GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 232270 0.69 0.723121
Target:  5'- gCUCGGaCCGUGA-CGGUGGAUgucgucgcgcccaCGGUCCg -3'
miRNA:   3'- -GAGCC-GGCGUUcGCCGCUUG-------------GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 228981 0.68 0.795267
Target:  5'- --aGGUgCGCGGGCGGCGcagGACCGG-Ca -3'
miRNA:   3'- gagCCG-GCGUUCGCCGC---UUGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 228962 0.66 0.872334
Target:  5'- -gCGGCCGaagagcguGCGGUGAucucGCaGGUCCc -3'
miRNA:   3'- gaGCCGGCguu-----CGCCGCU----UGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 227637 0.71 0.629203
Target:  5'- -gCGGCC-CGAGCGGCacGCCuGGUCa -3'
miRNA:   3'- gaGCCGGcGUUCGCCGcuUGG-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 225845 0.66 0.879088
Target:  5'- -aCGGCgCGCucGUGGUGGugCGGgcacaggugCCg -3'
miRNA:   3'- gaGCCG-GCGuuCGCCGCUugGCCa--------GG- -5'
14641 3' -59.8 NC_003521.1 + 224422 0.67 0.843475
Target:  5'- -cCGGCCagGCGcugcGUGGUGGGCgagCGGUCCa -3'
miRNA:   3'- gaGCCGG--CGUu---CGCCGCUUG---GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 224006 0.67 0.811926
Target:  5'- cCUCcuGCgGC-AGCGGCGGGCCcggcGGUCg -3'
miRNA:   3'- -GAGc-CGgCGuUCGCCGCUUGG----CCAGg -5'
14641 3' -59.8 NC_003521.1 + 223322 0.68 0.79442
Target:  5'- --gGGCCGgGaaccgccgugaccGGCGGCGccgcuACCGGUgCCg -3'
miRNA:   3'- gagCCGGCgU-------------UCGCCGCu----UGGCCA-GG- -5'
14641 3' -59.8 NC_003521.1 + 218721 0.7 0.656991
Target:  5'- -gCGGCgGCGggcgagaAGCGGCGucgggaCGGUCCc -3'
miRNA:   3'- gaGCCGgCGU-------UCGCCGCuug---GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 218617 0.73 0.5105
Target:  5'- uUCGGCCGCcAGCGcGCGGcgguaagcggccacgGCCGGcggcgCCu -3'
miRNA:   3'- gAGCCGGCGuUCGC-CGCU---------------UGGCCa----GG- -5'
14641 3' -59.8 NC_003521.1 + 218074 0.66 0.865391
Target:  5'- uCUCGaaGCacaGCgAGGCGGCGGcGCCGGUg- -3'
miRNA:   3'- -GAGC--CGg--CG-UUCGCCGCU-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 217379 0.66 0.864686
Target:  5'- -aCGGCCaggcacaccguggGCAccgccaggcugAGCGGCGGcaugaaGCCGGUgCa -3'
miRNA:   3'- gaGCCGG-------------CGU-----------UCGCCGCU------UGGCCAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.