miRNA display CGI


Results 41 - 60 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 201548 0.66 0.872334
Target:  5'- -cCGGCgaCGUGGcGCGGCuguAUCGGUCCa -3'
miRNA:   3'- gaGCCG--GCGUU-CGCCGcu-UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 228962 0.66 0.872334
Target:  5'- -gCGGCCGaagagcguGCGGUGAucucGCaGGUCCc -3'
miRNA:   3'- gaGCCGGCguu-----CGCCGCU----UGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 4343 0.66 0.872334
Target:  5'- cCUCGGUCu----CGGaCGGACCGGUUCg -3'
miRNA:   3'- -GAGCCGGcguucGCC-GCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 129040 0.66 0.872334
Target:  5'- gUCGGCCGUguucuuGAGCGcGCGcagcACCGuGUgCa -3'
miRNA:   3'- gAGCCGGCG------UUCGC-CGCu---UGGC-CAgG- -5'
14641 3' -59.8 NC_003521.1 + 216839 0.66 0.872334
Target:  5'- --aGGUCGCAGcccGCGGCGGacgACUGuUCCa -3'
miRNA:   3'- gagCCGGCGUU---CGCCGCU---UGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 5868 0.66 0.872334
Target:  5'- gUUGGuCCGCAGGCuG-GAGCCGucgucGUCCu -3'
miRNA:   3'- gAGCC-GGCGUUCGcCgCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 102944 0.66 0.872334
Target:  5'- aUCGGa--CAGGCGGuUGAuCUGGUCCa -3'
miRNA:   3'- gAGCCggcGUUCGCC-GCUuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 6049 0.66 0.871648
Target:  5'- uCUCGGgCGguAGCGGgucgaCGAagggaaugcgacgGCCGGUgCg -3'
miRNA:   3'- -GAGCCgGCguUCGCC-----GCU-------------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 127083 0.66 0.871648
Target:  5'- gUCaGCCGCcagcaggaacgucGGGCGGUaGAAgaGGUCCa -3'
miRNA:   3'- gAGcCGGCG-------------UUCGCCG-CUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 126127 0.66 0.86819
Target:  5'- gUCGuGCCGguAcacgugcauggggaaGaCGGCGAACaGGUCCu -3'
miRNA:   3'- gAGC-CGGCguU---------------C-GCCGCUUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 22198 0.66 0.866093
Target:  5'- -gUGGCCGCuuaccgccgcgcgcuGGCGGCcGAACCGuaCCu -3'
miRNA:   3'- gaGCCGGCGu--------------UCGCCG-CUUGGCcaGG- -5'
14641 3' -59.8 NC_003521.1 + 120543 0.66 0.865391
Target:  5'- cCUCGGCgGCcGGCGGUc--CCGGgggagcgCCc -3'
miRNA:   3'- -GAGCCGgCGuUCGCCGcuuGGCCa------GG- -5'
14641 3' -59.8 NC_003521.1 + 91766 0.66 0.865391
Target:  5'- -gCGGCCGCGucgaagcccAGC-GCGGGCaCGG-CCu -3'
miRNA:   3'- gaGCCGGCGU---------UCGcCGCUUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 25637 0.66 0.865391
Target:  5'- -cUGGCgCGUgaccacgacaucAGGCGGCaGAucguGCUGGUCCa -3'
miRNA:   3'- gaGCCG-GCG------------UUCGCCG-CU----UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 142989 0.66 0.865391
Target:  5'- uCUCuGUCGCAccGGCGGuCGcGCC-GUCCg -3'
miRNA:   3'- -GAGcCGGCGU--UCGCC-GCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 120949 0.66 0.865391
Target:  5'- -nCGGCgagggGCAGGgGGCGGGgCGGUUUg -3'
miRNA:   3'- gaGCCGg----CGUUCgCCGCUUgGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 137168 0.66 0.865391
Target:  5'- -gCGGCCGC-AGCGGCc-GCCG--CCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCcaGG- -5'
14641 3' -59.8 NC_003521.1 + 74791 0.66 0.865391
Target:  5'- -aCGGCgGCAgcgguAGCGGCGAGacgcggacggaCGGcgCCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCUUg----------GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 173465 0.66 0.865391
Target:  5'- -cCGGCgGU-AGUGGCGucgauACCGG-CCu -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCu----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 130753 0.66 0.865391
Target:  5'- gUCGGCgggCGCGAGCGcCGcGCCGGg-- -3'
miRNA:   3'- gAGCCG---GCGUUCGCcGCuUGGCCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.