miRNA display CGI


Results 61 - 80 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 142989 0.66 0.865391
Target:  5'- uCUCuGUCGCAccGGCGGuCGcGCC-GUCCg -3'
miRNA:   3'- -GAGcCGGCGU--UCGCC-GCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 120949 0.66 0.865391
Target:  5'- -nCGGCgagggGCAGGgGGCGGGgCGGUUUg -3'
miRNA:   3'- gaGCCGg----CGUUCgCCGCUUgGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 217379 0.66 0.864686
Target:  5'- -aCGGCCaggcacaccguggGCAccgccaggcugAGCGGCGGcaugaaGCCGGUgCa -3'
miRNA:   3'- gaGCCGG-------------CGU-----------UCGCCGCU------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 86347 0.66 0.858263
Target:  5'- --aGGCCGU--GCaGCGAGCCGauguaGUCCu -3'
miRNA:   3'- gagCCGGCGuuCGcCGCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 5302 0.66 0.858263
Target:  5'- -cCGGCauguuuCGCGggGGCGGCGugccccGCCGG-CCg -3'
miRNA:   3'- gaGCCG------GCGU--UCGCCGCu-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 74905 0.66 0.858263
Target:  5'- -aCGGUgGC-GGCGGUGGAgUCGGcCCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCUU-GGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 30854 0.66 0.858263
Target:  5'- uCUgGGCCGUccGCGGCaacuucuccGAACCcuuuccccgGGUCUa -3'
miRNA:   3'- -GAgCCGGCGuuCGCCG---------CUUGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 122624 0.66 0.858263
Target:  5'- -gCGGCCGCGcgcucGGCGGCcccGAcuuuGCCGG-Cg -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCG---CU----UGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 234431 0.66 0.8539
Target:  5'- gUCGccGCCGCGGuagcuGCGGCGccccuccgcgaccccGACCGGcCCc -3'
miRNA:   3'- gAGC--CGGCGUU-----CGCCGC---------------UUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 70127 0.66 0.8539
Target:  5'- --gGGCCGCuAucagggccucgagcuGCGGCGAGCgCGGcugCCu -3'
miRNA:   3'- gagCCGGCGuU---------------CGCCGCUUG-GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 132608 0.66 0.8539
Target:  5'- gUCGGCgucCGCAacggcuuccagacucGGCGGCGGcgccACCGGcgguucugcuUCCu -3'
miRNA:   3'- gAGCCG---GCGU---------------UCGCCGCU----UGGCC----------AGG- -5'
14641 3' -59.8 NC_003521.1 + 174465 0.66 0.850956
Target:  5'- gCUC-GCCGCcGGCcacGCGAGCgGGaUCCa -3'
miRNA:   3'- -GAGcCGGCGuUCGc--CGCUUGgCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 184164 0.66 0.850956
Target:  5'- -cUGGUgCGCGAGCGG-GAggugcACCGGcCCg -3'
miRNA:   3'- gaGCCG-GCGUUCGCCgCU-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 86440 0.66 0.850956
Target:  5'- aUUGGCgGC-AGCGGCGAccgaggacgcgACagaGGUCg -3'
miRNA:   3'- gAGCCGgCGuUCGCCGCU-----------UGg--CCAGg -5'
14641 3' -59.8 NC_003521.1 + 188186 0.66 0.850956
Target:  5'- -gCGuGCCGCGAG-GGCcGAcgcaggaucacCCGGUCCu -3'
miRNA:   3'- gaGC-CGGCGUUCgCCGcUU-----------GGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 118203 0.66 0.850956
Target:  5'- --gGGCCGcCGAGCGcGCGGccGCCGccGUCg -3'
miRNA:   3'- gagCCGGC-GUUCGC-CGCU--UGGC--CAGg -5'
14641 3' -59.8 NC_003521.1 + 122110 0.66 0.850956
Target:  5'- -gCGGCUGC-AGCGGCGucucGCCGcGgCUg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCu---UGGC-CaGG- -5'
14641 3' -59.8 NC_003521.1 + 142925 0.66 0.850956
Target:  5'- gUCGGCguUGCAgcAGCGGCGGuCagGGUCa -3'
miRNA:   3'- gAGCCG--GCGU--UCGCCGCUuGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 209562 0.66 0.850956
Target:  5'- -gUGGCgGCGacGGUGGCGGG--GGUCCg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUggCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.