miRNA display CGI


Results 81 - 100 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 118203 0.66 0.850956
Target:  5'- --gGGCCGcCGAGCGcGCGGccGCCGccGUCg -3'
miRNA:   3'- gagCCGGC-GUUCGC-CGCU--UGGC--CAGg -5'
14641 3' -59.8 NC_003521.1 + 147090 0.66 0.850956
Target:  5'- aUCGGCCGacGGCucacGCGAcuuuucuccgacGCCGGUCa -3'
miRNA:   3'- gAGCCGGCguUCGc---CGCU------------UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 174465 0.66 0.850956
Target:  5'- gCUC-GCCGCcGGCcacGCGAGCgGGaUCCa -3'
miRNA:   3'- -GAGcCGGCGuUCGc--CGCUUGgCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 135235 0.66 0.850956
Target:  5'- -gCGGCUGCGccggcGGCGGCGAcgACaCGG-Cg -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCGCU--UG-GCCaGg -5'
14641 3' -59.8 NC_003521.1 + 122110 0.66 0.850956
Target:  5'- -gCGGCUGC-AGCGGCGucucGCCGcGgCUg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCu---UGGC-CaGG- -5'
14641 3' -59.8 NC_003521.1 + 131044 0.66 0.850956
Target:  5'- cCUgGGCgGC-GGCGGCGGGCC--UCUg -3'
miRNA:   3'- -GAgCCGgCGuUCGCCGCUUGGccAGG- -5'
14641 3' -59.8 NC_003521.1 + 133750 0.66 0.850956
Target:  5'- -cUGGCCgGCAGGCccGGCGAuuCCGGg-- -3'
miRNA:   3'- gaGCCGG-CGUUCG--CCGCUu-GGCCagg -5'
14641 3' -59.8 NC_003521.1 + 142925 0.66 0.850956
Target:  5'- gUCGGCguUGCAgcAGCGGCGGuCagGGUCa -3'
miRNA:   3'- gAGCCG--GCGU--UCGCCGCUuGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 188186 0.66 0.850956
Target:  5'- -gCGuGCCGCGAG-GGCcGAcgcaggaucacCCGGUCCu -3'
miRNA:   3'- gaGC-CGGCGUUCgCCGcUU-----------GGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 130303 0.66 0.850956
Target:  5'- --aGGCCGCGGcGCcGCGcauCCaGGUCCa -3'
miRNA:   3'- gagCCGGCGUU-CGcCGCuu-GG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 119772 0.66 0.850956
Target:  5'- gCUCGGCCucCAGGCuGCGGuccaccuuCCGGcgCCa -3'
miRNA:   3'- -GAGCCGGc-GUUCGcCGCUu-------GGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 72845 0.66 0.850956
Target:  5'- -aCGGCCugGGGCGGCGAcgguaggcacGgCGGUCg -3'
miRNA:   3'- gaGCCGGcgUUCGCCGCU----------UgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 97296 0.66 0.850956
Target:  5'- -cCGGCgGCGcGCGuGCGGAUCaGGcCCg -3'
miRNA:   3'- gaGCCGgCGUuCGC-CGCUUGG-CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 52186 0.66 0.850216
Target:  5'- -gUGuGCCGCcgGGGCGGCGAGCucaucagacaguaCGGgggCCg -3'
miRNA:   3'- gaGC-CGGCG--UUCGCCGCUUG-------------GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 126567 0.66 0.84873
Target:  5'- --aGGCCGUggGCaGCGGgaagccgccgucguGCCGGUg- -3'
miRNA:   3'- gagCCGGCGuuCGcCGCU--------------UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 170234 0.67 0.843475
Target:  5'- uCUCaaCCGCGAGCucGGCGA-CCGGcUCUa -3'
miRNA:   3'- -GAGccGGCGUUCG--CCGCUuGGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 86701 0.67 0.843475
Target:  5'- --gGGCCGC-GGCGGCGAcgacgaGgCGGUg- -3'
miRNA:   3'- gagCCGGCGuUCGCCGCU------UgGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 19111 0.67 0.843475
Target:  5'- --gGGagacgaCGCGGGUGGCGGgccGCCGGUguaCCa -3'
miRNA:   3'- gagCCg-----GCGUUCGCCGCU---UGGCCA---GG- -5'
14641 3' -59.8 NC_003521.1 + 7739 0.67 0.843475
Target:  5'- -gCGG-CGCGAGCGGCgGAGgCGGcggcagUCCc -3'
miRNA:   3'- gaGCCgGCGUUCGCCG-CUUgGCC------AGG- -5'
14641 3' -59.8 NC_003521.1 + 41096 0.67 0.843475
Target:  5'- -gCGGaCCGCucaacGCGGUGGuGCUGGUCa -3'
miRNA:   3'- gaGCC-GGCGuu---CGCCGCU-UGGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.