miRNA display CGI


Results 61 - 80 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 53502 0.67 0.81924
Target:  5'- --aGGCCGCugcuGCGGCGucgcagcGGCCGauggugcuGUCCg -3'
miRNA:   3'- gagCCGGCGuu--CGCCGC-------UUGGC--------CAGG- -5'
14641 3' -59.8 NC_003521.1 + 54244 0.67 0.830374
Target:  5'- -gCGGCUGCuaccguucuggagacAAGCaGGCGAaguucguGCCGGcCCu -3'
miRNA:   3'- gaGCCGGCG---------------UUCG-CCGCU-------UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 55821 0.69 0.733272
Target:  5'- gCUCGaaccaGUCGCAGcGCGGCaGGCCGG-CCu -3'
miRNA:   3'- -GAGC-----CGGCGUU-CGCCGcUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 56709 0.68 0.79442
Target:  5'- uCUCGGCCGCgcauuAuuacucguucaucAGCGGUccGAGCgccaUGGUCCa -3'
miRNA:   3'- -GAGCCGGCG-----U-------------UCGCCG--CUUG----GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 57586 0.68 0.769326
Target:  5'- --aGGgCGCcGGCGGCGAACCccgaGUCa -3'
miRNA:   3'- gagCCgGCGuUCGCCGCUUGGc---CAGg -5'
14641 3' -59.8 NC_003521.1 + 58407 0.67 0.803665
Target:  5'- -gCGGCCGCGugauGCGGCGGuugacgaaGCCGcagcgcugCCg -3'
miRNA:   3'- gaGCCGGCGUu---CGCCGCU--------UGGCca------GG- -5'
14641 3' -59.8 NC_003521.1 + 59357 0.68 0.78674
Target:  5'- ---cGCUGCAGGCGGCGcGCCaG-CCg -3'
miRNA:   3'- gagcCGGCGUUCGCCGCuUGGcCaGG- -5'
14641 3' -59.8 NC_003521.1 + 60689 0.69 0.741509
Target:  5'- -gCGGCCGCGcgggggacccgggGGCGGC--GCgGGUCg -3'
miRNA:   3'- gaGCCGGCGU-------------UCGCCGcuUGgCCAGg -5'
14641 3' -59.8 NC_003521.1 + 63871 0.66 0.879088
Target:  5'- -aCGGUgGacgAGGCGGCGcGCCGGgagCUg -3'
miRNA:   3'- gaGCCGgCg--UUCGCCGCuUGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 66743 0.67 0.833499
Target:  5'- aUCGuGCCGCGAcuggacgacaucccGCgGGUGAugccGCCGGcCCa -3'
miRNA:   3'- gAGC-CGGCGUU--------------CG-CCGCU----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 70127 0.66 0.8539
Target:  5'- --gGGCCGCuAucagggccucgagcuGCGGCGAGCgCGGcugCCu -3'
miRNA:   3'- gagCCGGCGuU---------------CGCCGCUUG-GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 70226 0.69 0.705397
Target:  5'- gCUUGGCgCGCAgcagggcuaGGCagGGCGAGCUGGUg- -3'
miRNA:   3'- -GAGCCG-GCGU---------UCG--CCGCUUGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 70373 0.67 0.828013
Target:  5'- --aGaGCCGCAGGCGGCGGuagaGGUa- -3'
miRNA:   3'- gagC-CGGCGUUCGCCGCUugg-CCAgg -5'
14641 3' -59.8 NC_003521.1 + 71506 0.74 0.462366
Target:  5'- -cCGGCCGCGAcGCuGCGAccgacGCCGG-CCg -3'
miRNA:   3'- gaGCCGGCGUU-CGcCGCU-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 72845 0.66 0.850956
Target:  5'- -aCGGCCugGGGCGGCGAcgguaggcacGgCGGUCg -3'
miRNA:   3'- gaGCCGGcgUUCGCCGCU----------UgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 72983 0.73 0.479927
Target:  5'- -gCGGCCGCGGGgGGCcuGGCCGcUCCu -3'
miRNA:   3'- gaGCCGGCGUUCgCCGc-UUGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 74791 0.66 0.865391
Target:  5'- -aCGGCgGCAgcgguAGCGGCGAGacgcggacggaCGGcgCCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCUUg----------GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 74905 0.66 0.858263
Target:  5'- -aCGGUgGC-GGCGGUGGAgUCGGcCCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCUU-GGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 75797 0.68 0.751484
Target:  5'- --aGGCCGCGAuggaagccGCGGCGAuCgCGG-CCu -3'
miRNA:   3'- gagCCGGCGUU--------CGCCGCUuG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 76203 0.7 0.635915
Target:  5'- -gCGGUCGCGguggugguaugaguGGCGGCG-GCCGGUg- -3'
miRNA:   3'- gaGCCGGCGU--------------UCGCCGCuUGGCCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.