miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 5' -58.6 NC_003521.1 + 97576 0.66 0.831732
Target:  5'- gGAGGAGGAgUAGUaggagaugGCC-GCCGAGAAg -3'
miRNA:   3'- -CUCCUCCUgGUCGg-------UGGaCGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 99952 0.66 0.862858
Target:  5'- cAGGGGGGCgGcGgCGCCUcgGCCGAGAc -3'
miRNA:   3'- cUCCUCCUGgU-CgGUGGA--CGGUUCUu -5'
14641 5' -58.6 NC_003521.1 + 112285 0.66 0.862858
Target:  5'- aAGGGccaccugacgucGGGCCAGCCgcACCUGCCcAGc- -3'
miRNA:   3'- cUCCU------------CCUGGUCGG--UGGACGGuUCuu -5'
14641 5' -58.6 NC_003521.1 + 126835 0.69 0.678695
Target:  5'- aGAGGGuugcagccggugcccGG-CCGGCCGCCUGCCGu--- -3'
miRNA:   3'- -CUCCU---------------CCuGGUCGGUGGACGGUucuu -5'
14641 5' -58.6 NC_003521.1 + 131681 0.66 0.847668
Target:  5'- -uGGAGGACUGcGCCuuCUGCCA-GAGc -3'
miRNA:   3'- cuCCUCCUGGU-CGGugGACGGUuCUU- -5'
14641 5' -58.6 NC_003521.1 + 134340 0.69 0.684633
Target:  5'- --cGGGGACCccccGCCGCCgaugcugGCCGAGAAg -3'
miRNA:   3'- cucCUCCUGGu---CGGUGGa------CGGUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 135657 0.66 0.855359
Target:  5'- cGAGGAGu-CCAGCCcCCgucGCCuGGAAu -3'
miRNA:   3'- -CUCCUCcuGGUCGGuGGa--CGGuUCUU- -5'
14641 5' -58.6 NC_003521.1 + 137869 0.66 0.847668
Target:  5'- uGAGGAaacuGGACCAGaucaaCCGCCUGuCCGAu-- -3'
miRNA:   3'- -CUCCU----CCUGGUC-----GGUGGAC-GGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 144494 0.68 0.723755
Target:  5'- cGAGGAGGACCuggacGCCGaCUGUCGgcAGAu -3'
miRNA:   3'- -CUCCUCCUGGu----CGGUgGACGGU--UCUu -5'
14641 5' -58.6 NC_003521.1 + 152079 0.67 0.806549
Target:  5'- -cGGAGGACCAcggcgacgugcGCCGgcUCUGCgAGGAGa -3'
miRNA:   3'- cuCCUCCUGGU-----------CGGU--GGACGgUUCUU- -5'
14641 5' -58.6 NC_003521.1 + 155407 0.67 0.823501
Target:  5'- -cGGGGGGCUgggcaccggaGGCCugCUGCCGGc-- -3'
miRNA:   3'- cuCCUCCUGG----------UCGGugGACGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 155471 0.68 0.721823
Target:  5'- gGAGGGGGugagagagacGCCGGCCugCggcgggccgcggGCCAAGGc -3'
miRNA:   3'- -CUCCUCC----------UGGUCGGugGa-----------CGGUUCUu -5'
14641 5' -58.6 NC_003521.1 + 159959 0.7 0.624865
Target:  5'- cGAGGAGuGCCAGCUACCcaGCCucAAGAu -3'
miRNA:   3'- -CUCCUCcUGGUCGGUGGa-CGG--UUCUu -5'
14641 5' -58.6 NC_003521.1 + 163947 0.67 0.823501
Target:  5'- cGAGGAGGAgucUCGGCCGCggacGCCgAAGAu -3'
miRNA:   3'- -CUCCUCCU---GGUCGGUGga--CGG-UUCUu -5'
14641 5' -58.6 NC_003521.1 + 164832 0.72 0.516756
Target:  5'- gGAGGAGGaACCGGCgGCCggcGCCAGa-- -3'
miRNA:   3'- -CUCCUCC-UGGUCGgUGGa--CGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 178046 0.66 0.855359
Target:  5'- uGGGGGGugUAGCaCACCUcGCCcucAGGGc -3'
miRNA:   3'- cUCCUCCugGUCG-GUGGA-CGG---UUCUu -5'
14641 5' -58.6 NC_003521.1 + 186550 0.67 0.823501
Target:  5'- gGAGGcAGGGCCGGCacgaacuuCGCCUGCUugucuccAGAAc -3'
miRNA:   3'- -CUCC-UCCUGGUCG--------GUGGACGGu------UCUU- -5'
14641 5' -58.6 NC_003521.1 + 193239 0.67 0.797843
Target:  5'- gGAGGAGGACUccgaccGCCACCgugGCCc---- -3'
miRNA:   3'- -CUCCUCCUGGu-----CGGUGGa--CGGuucuu -5'
14641 5' -58.6 NC_003521.1 + 196697 0.66 0.847668
Target:  5'- gGAGGAGGAgCAGCgACg-GCCGAc-- -3'
miRNA:   3'- -CUCCUCCUgGUCGgUGgaCGGUUcuu -5'
14641 5' -58.6 NC_003521.1 + 206113 0.66 0.83979
Target:  5'- aGGGAGG-CCGGUCAgCUGCUgcgcgaugcuGAGAAc -3'
miRNA:   3'- cUCCUCCuGGUCGGUgGACGG----------UUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.