miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 77030 0.69 0.857077
Target:  5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3'
miRNA:   3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 77759 0.68 0.898076
Target:  5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3'
miRNA:   3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5'
14642 3' -56.2 NC_003521.1 + 78134 0.67 0.931462
Target:  5'- uGG-UGGGCgCGuuaGCGGCgGCGgCCGCGa -3'
miRNA:   3'- -CCaACCUG-GCua-UGUCGgCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 79586 0.66 0.969828
Target:  5'- --cUGG-CCGcUACuGCCGCuGCCGCc -3'
miRNA:   3'- ccaACCuGGCuAUGuCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 87149 0.66 0.966912
Target:  5'- uGUUGGAgCGGgcGCAGuUCGUGCgCGCGg -3'
miRNA:   3'- cCAACCUgGCUa-UGUC-GGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 88490 0.68 0.904185
Target:  5'- aGGgUGGGCgGGUagaGCGGCaCGCGCaGCGa -3'
miRNA:   3'- -CCaACCUGgCUA---UGUCG-GCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 89848 0.67 0.945193
Target:  5'- -----aGCCGAUGuCGGCCGCcagcGCCGCGu -3'
miRNA:   3'- ccaaccUGGCUAU-GUCGGCG----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 91508 0.67 0.945193
Target:  5'- aGGcgUGaGACCacgGCGGCCGCGUCGuCGc -3'
miRNA:   3'- -CCa-AC-CUGGcuaUGUCGGCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 92167 0.68 0.917962
Target:  5'- uGGUUGGcggccauccccGCCGAgcucgggGCcguuuuucgccgcccGGCCGCGCgACGa -3'
miRNA:   3'- -CCAACC-----------UGGCUa------UG---------------UCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 92396 0.67 0.940834
Target:  5'- --cUGGagccGCCGGcGCGGCCGC-CCGCa -3'
miRNA:   3'- ccaACC----UGGCUaUGUCGGCGcGGUGc -5'
14642 3' -56.2 NC_003521.1 + 92638 0.73 0.699702
Target:  5'- --cUGGACuCGGUGCAGCUgguGUGCUACGc -3'
miRNA:   3'- ccaACCUG-GCUAUGUCGG---CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 95134 0.69 0.878485
Target:  5'- ---aGGAuaGGguaagGCGGCCGCGCCgACGg -3'
miRNA:   3'- ccaaCCUggCUa----UGUCGGCGCGG-UGC- -5'
14642 3' -56.2 NC_003521.1 + 95218 0.66 0.969828
Target:  5'- ---gGGugCGAcUGCAGCaGCgagGCCACGg -3'
miRNA:   3'- ccaaCCugGCU-AUGUCGgCG---CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 98001 0.68 0.904185
Target:  5'- uGUUGGuGCCGAUGCcgaagcccaGGCUGuUGCCACc -3'
miRNA:   3'- cCAACC-UGGCUAUG---------UCGGC-GCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 98421 0.68 0.904185
Target:  5'- cGUUGG-CCaggGCGGCCaGgGCCGCGg -3'
miRNA:   3'- cCAACCuGGcuaUGUCGG-CgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 98472 0.69 0.864408
Target:  5'- cGGcgGcGGCCGcgGCGGCCGUgGCgGCGg -3'
miRNA:   3'- -CCaaC-CUGGCuaUGUCGGCG-CGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 98531 0.7 0.817732
Target:  5'- cGGcUGGGCCGcUGCAGCgGCGgCGgGu -3'
miRNA:   3'- -CCaACCUGGCuAUGUCGgCGCgGUgC- -5'
14642 3' -56.2 NC_003521.1 + 99606 0.66 0.960495
Target:  5'- cGUUGGugaccugcagcGCCcg-GCGGCgcaGCGCCACGg -3'
miRNA:   3'- cCAACC-----------UGGcuaUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 100678 0.66 0.956983
Target:  5'- uGGUgauagUGGugauGCUGAUGCGGagGCGCCGCc -3'
miRNA:   3'- -CCA-----ACC----UGGCUAUGUCggCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 103378 0.66 0.956983
Target:  5'- ----aGACCGugucggGCAGCCGCGCgugcuCGCGg -3'
miRNA:   3'- ccaacCUGGCua----UGUCGGCGCG-----GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.