miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 54288 0.66 0.960495
Target:  5'- ---aGaGGCCGuUGCGGCUG-GCCACGu -3'
miRNA:   3'- ccaaC-CUGGCuAUGUCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 56319 0.66 0.963803
Target:  5'- --aUGGAugaagaccaCCGAggcGCGGCCGCGCaggGCGc -3'
miRNA:   3'- ccaACCU---------GGCUa--UGUCGGCGCGg--UGC- -5'
14642 3' -56.2 NC_003521.1 + 56458 0.76 0.534201
Target:  5'- ---aGGuCCGAgagGC-GCCGCGCCACGg -3'
miRNA:   3'- ccaaCCuGGCUa--UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 59156 0.69 0.864408
Target:  5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3'
miRNA:   3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 59422 0.66 0.960495
Target:  5'- --gUGG-CaCGcgACAGCgGCGCCGCc -3'
miRNA:   3'- ccaACCuG-GCuaUGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 59648 0.67 0.926446
Target:  5'- cGUUGGugCGGcagacGCuGgCGCGCCugGa -3'
miRNA:   3'- cCAACCugGCUa----UGuCgGCGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 59858 0.7 0.833983
Target:  5'- --aUGGGCCGGUcaACGGCgaUGUGCCGCc -3'
miRNA:   3'- ccaACCUGGCUA--UGUCG--GCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 60328 0.68 0.904185
Target:  5'- ---cGGcGCUGAUGCAGCCG-GCCAa- -3'
miRNA:   3'- ccaaCC-UGGCUAUGUCGGCgCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 60664 0.67 0.940835
Target:  5'- aGUgGGGCaCGAUGCucuucguGCUGCGgCCGCGc -3'
miRNA:   3'- cCAaCCUG-GCUAUGu------CGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 62128 0.68 0.904185
Target:  5'- aGGUcaccUGGuACCuGA-GCGGCCGCGaCCACc -3'
miRNA:   3'- -CCA----ACC-UGG-CUaUGUCGGCGC-GGUGc -5'
14642 3' -56.2 NC_003521.1 + 63069 0.67 0.925932
Target:  5'- ----cGACCGcgaccccGUACAGCUGCGCCGgCGc -3'
miRNA:   3'- ccaacCUGGC-------UAUGUCGGCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 65696 0.7 0.80937
Target:  5'- ---gGGACCaggcaaGAaggACAGCgGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG------CUa--UGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 69586 0.66 0.969828
Target:  5'- --cUGGAUUGcgACAGaCGCGCC-CGg -3'
miRNA:   3'- ccaACCUGGCuaUGUCgGCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 70728 0.66 0.956621
Target:  5'- cGGaUGuACCGGcacuucguccagcUGCAG-CGCGCCGCGg -3'
miRNA:   3'- -CCaACcUGGCU-------------AUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 71321 0.71 0.792208
Target:  5'- gGGgcGGcggcguCCGAUACAGCCGCuucuugGCCaACGa -3'
miRNA:   3'- -CCaaCCu-----GGCUAUGUCGGCG------CGG-UGC- -5'
14642 3' -56.2 NC_003521.1 + 72732 0.7 0.841859
Target:  5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3'
miRNA:   3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5'
14642 3' -56.2 NC_003521.1 + 73139 0.68 0.904185
Target:  5'- cGGcggGGGCaGcgGCGGCgGCGCCGCc -3'
miRNA:   3'- -CCaa-CCUGgCuaUGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 73763 0.68 0.92121
Target:  5'- --gUGGGCCGGcacCGGCgucaugaGCGCCACGc -3'
miRNA:   3'- ccaACCUGGCUau-GUCGg------CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 74159 0.66 0.953265
Target:  5'- ---gGGGCCcaGGUGCcgcuGGCCgacuGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG--CUAUG----UCGG----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 76372 0.72 0.737786
Target:  5'- cGGc--GACCGugACGGCCGCGgCCGCGg -3'
miRNA:   3'- -CCaacCUGGCuaUGUCGGCGC-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.