miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 213711 0.66 0.969828
Target:  5'- --gUGGGCCucgggGAUGCccAGCCagacgGCGCCGCa -3'
miRNA:   3'- ccaACCUGG-----CUAUG--UCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 113574 0.66 0.969828
Target:  5'- ---aGGACgCGGUGgGGCUGgGCCuCGg -3'
miRNA:   3'- ccaaCCUG-GCUAUgUCGGCgCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 79586 0.66 0.969828
Target:  5'- --cUGG-CCGcUACuGCCGCuGCCGCc -3'
miRNA:   3'- ccaACCuGGCuAUGuCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 54156 0.66 0.969545
Target:  5'- cGUUGGAgaggccgccgccuCCGccACcGCCGCGCgACGu -3'
miRNA:   3'- cCAACCU-------------GGCuaUGuCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 150455 0.66 0.963803
Target:  5'- gGGUccuccUGGuCUGggGCGGCgaGCGCCugGu -3'
miRNA:   3'- -CCA-----ACCuGGCuaUGUCGg-CGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 128130 0.66 0.963803
Target:  5'- ---gGGuCCGAggGCGGcCCGCGCUcgGCGa -3'
miRNA:   3'- ccaaCCuGGCUa-UGUC-GGCGCGG--UGC- -5'
14642 3' -56.2 NC_003521.1 + 120846 0.66 0.963481
Target:  5'- gGGUgccaugcUGGACuCGGccuugagGCGGCCGCGCguCa -3'
miRNA:   3'- -CCA-------ACCUG-GCUa------UGUCGGCGCGguGc -5'
14642 3' -56.2 NC_003521.1 + 99606 0.66 0.960495
Target:  5'- cGUUGGugaccugcagcGCCcg-GCGGCgcaGCGCCACGg -3'
miRNA:   3'- cCAACC-----------UGGcuaUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 113363 0.66 0.963803
Target:  5'- cGGgccgGGGgCGAggaggaggguUACGGCgGaCGCCGCGg -3'
miRNA:   3'- -CCaa--CCUgGCU----------AUGUCGgC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 49119 0.66 0.969828
Target:  5'- uGGU--GACCGcgGC-GCCGCuGCUGCGg -3'
miRNA:   3'- -CCAacCUGGCuaUGuCGGCG-CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 166793 0.67 0.949336
Target:  5'- gGGUcGGA-CGAUGCcGCCGcCGCUGCu -3'
miRNA:   3'- -CCAaCCUgGCUAUGuCGGC-GCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 32078 0.67 0.949336
Target:  5'- --cUGGcCCGuggccACGGCCaGCGCCAUGc -3'
miRNA:   3'- ccaACCuGGCua---UGUCGG-CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 226807 0.67 0.945193
Target:  5'- cGUaGGACCug-ACGGUacaGCGCCAUGg -3'
miRNA:   3'- cCAaCCUGGcuaUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 52223 0.67 0.945193
Target:  5'- ---gGGGCCGGUAgGGCgGCggGCUACa -3'
miRNA:   3'- ccaaCCUGGCUAUgUCGgCG--CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 7634 0.67 0.945193
Target:  5'- cGGgaacGACCGAcgguaACGGCgGcCGCCACGg -3'
miRNA:   3'- -CCaac-CUGGCUa----UGUCGgC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 116367 0.67 0.940835
Target:  5'- ---cGaGGCCGAgcugcUGCuGCCGCGCgACGu -3'
miRNA:   3'- ccaaC-CUGGCU-----AUGuCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 60664 0.67 0.940835
Target:  5'- aGUgGGGCaCGAUGCucuucguGCUGCGgCCGCGc -3'
miRNA:   3'- cCAaCCUG-GCUAUGu------CGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 168608 0.67 0.938115
Target:  5'- --aUGGGCUGcugggcGUGCGccaucugcuguugcuGCUGCGCCACGg -3'
miRNA:   3'- ccaACCUGGC------UAUGU---------------CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150812 0.67 0.949336
Target:  5'- gGGgcgcUGGACCGAaACAacguguccccGCaGCGCCACc -3'
miRNA:   3'- -CCa---ACCUGGCUaUGU----------CGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 187607 0.67 0.945193
Target:  5'- cGG-UGGGCaCGGccUGCcgggcgAGCCGgGCCGCGc -3'
miRNA:   3'- -CCaACCUG-GCU--AUG------UCGGCgCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.