miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 70728 0.66 0.956621
Target:  5'- cGGaUGuACCGGcacuucguccagcUGCAG-CGCGCCGCGg -3'
miRNA:   3'- -CCaACcUGGCU-------------AUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 134226 0.66 0.953265
Target:  5'- -cUUGG-CCGAguaGCuGcCCGCGCCGCc -3'
miRNA:   3'- ccAACCuGGCUa--UGuC-GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 172464 0.66 0.956983
Target:  5'- aGGcaGGGCCG--GCAGCggUGCGCCGuCGg -3'
miRNA:   3'- -CCaaCCUGGCuaUGUCG--GCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 223321 0.66 0.958412
Target:  5'- ---cGGGCCGGgaaccgccgugacCGGCgGCGCCGCu -3'
miRNA:   3'- ccaaCCUGGCUau-----------GUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 49119 0.66 0.969828
Target:  5'- uGGU--GACCGcgGC-GCCGCuGCUGCGg -3'
miRNA:   3'- -CCAacCUGGCuaUGuCGGCG-CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 181372 0.66 0.969828
Target:  5'- ---cGGAUCGG-ACAGCCuguaGCGCCAg- -3'
miRNA:   3'- ccaaCCUGGCUaUGUCGG----CGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 207125 0.66 0.966
Target:  5'- -cUUGGGCgGAgucCAGCUGCagcguuacgugcggGCCACGg -3'
miRNA:   3'- ccAACCUGgCUau-GUCGGCG--------------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 45285 0.66 0.969828
Target:  5'- --aUGGACCGGgcGCcGCUGgGCCAgGa -3'
miRNA:   3'- ccaACCUGGCUa-UGuCGGCgCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 141794 0.66 0.953265
Target:  5'- ---cGGACCGGcccGgAGCCGgCGCCAUc -3'
miRNA:   3'- ccaaCCUGGCUa--UgUCGGC-GCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 208954 0.66 0.960495
Target:  5'- ---cGGugCGGUACcgcucgcaCCGCGCCGCc -3'
miRNA:   3'- ccaaCCugGCUAUGuc------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 18975 0.66 0.963803
Target:  5'- aGGaggGGGUCGAggACGcGCCGCGCgACGa -3'
miRNA:   3'- -CCaa-CCUGGCUa-UGU-CGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 27679 0.66 0.962831
Target:  5'- --cUGGACCaAcgucuucaguucgcUGCGGCCGCaCCACGc -3'
miRNA:   3'- ccaACCUGGcU--------------AUGUCGGCGcGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 138047 0.66 0.966912
Target:  5'- ---cGGcGCCGucaucgcGCAGCCGCuGCCGCu -3'
miRNA:   3'- ccaaCC-UGGCua-----UGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 115511 0.66 0.956983
Target:  5'- uGGccGGACCc--ACcGCCGCGuCCGCGa -3'
miRNA:   3'- -CCaaCCUGGcuaUGuCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 213711 0.66 0.969828
Target:  5'- --gUGGGCCucgggGAUGCccAGCCagacgGCGCCGCa -3'
miRNA:   3'- ccaACCUGG-----CUAUG--UCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 36765 0.66 0.952108
Target:  5'- --gUGGugCGAcUGCGGCgacuggcagggccaCGCGCUGCGg -3'
miRNA:   3'- ccaACCugGCU-AUGUCG--------------GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 74159 0.66 0.953265
Target:  5'- ---gGGGCCcaGGUGCcgcuGGCCgacuGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG--CUAUG----UCGG----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 51122 0.66 0.953265
Target:  5'- cGGgaGGGCUGGUugagACAGCacgaGCGCaGCGa -3'
miRNA:   3'- -CCaaCCUGGCUA----UGUCGg---CGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 26989 0.66 0.953265
Target:  5'- --cUGGGCCGA-ACuGCUGCGaCUACa -3'
miRNA:   3'- ccaACCUGGCUaUGuCGGCGC-GGUGc -5'
14642 3' -56.2 NC_003521.1 + 184358 0.66 0.969828
Target:  5'- cGGgcGGGCCGuggcGCGGCgccucucggaccUGgGCCACGa -3'
miRNA:   3'- -CCaaCCUGGCua--UGUCG------------GCgCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.