miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 167205 0.72 0.728372
Target:  5'- -cUUGGGCUG--GCAGgCGCGCCGCa -3'
miRNA:   3'- ccAACCUGGCuaUGUCgGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 129563 0.72 0.736848
Target:  5'- cGGcgGGcCCGAcgauggcUGCuccGCCGCGCCGCGc -3'
miRNA:   3'- -CCaaCCuGGCU-------AUGu--CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 76372 0.72 0.737786
Target:  5'- cGGc--GACCGugACGGCCGCGgCCGCGg -3'
miRNA:   3'- -CCaacCUGGCuaUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 211352 0.72 0.737786
Target:  5'- uGGUUGGGgucCCGcaGCAGCCG-GUCGCGg -3'
miRNA:   3'- -CCAACCU---GGCuaUGUCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 127637 0.72 0.737786
Target:  5'- uGUUGa--CGAUGCAG-CGCGCCACGa -3'
miRNA:   3'- cCAACcugGCUAUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 172393 0.72 0.747116
Target:  5'- cGGUUGaGgggcGCCGGcGgAGCCGuCGCCGCGg -3'
miRNA:   3'- -CCAAC-C----UGGCUaUgUCGGC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 196329 0.72 0.747116
Target:  5'- --aUGGGCCGGUuguuGC-GCUGCGUCACGu -3'
miRNA:   3'- ccaACCUGGCUA----UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 110326 0.72 0.747116
Target:  5'- ---aGGGCCaucauGAcGCGGCCGCGCuCGCGg -3'
miRNA:   3'- ccaaCCUGG-----CUaUGUCGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 71321 0.71 0.792208
Target:  5'- gGGgcGGcggcguCCGAUACAGCCGCuucuugGCCaACGa -3'
miRNA:   3'- -CCaaCCu-----GGCUAUGUCGGCG------CGG-UGC- -5'
14642 3' -56.2 NC_003521.1 + 5534 0.71 0.792208
Target:  5'- cGGUgacGGcaGCCGGcGCGGCCGCcGCCAUc -3'
miRNA:   3'- -CCAa--CC--UGGCUaUGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 170665 0.71 0.792208
Target:  5'- --gUGGACUcguGAUagGCAGCCGCGCuCGCc -3'
miRNA:   3'- ccaACCUGG---CUA--UGUCGGCGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 129651 0.71 0.8
Target:  5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3'
miRNA:   3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 124029 0.71 0.800859
Target:  5'- gGGUcGcGGCCGuagACGGCCagcGUGCCGCGg -3'
miRNA:   3'- -CCAaC-CUGGCua-UGUCGG---CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 162367 0.71 0.800859
Target:  5'- ---cGGGCCGcGUuccCAGCCGCGCCGa- -3'
miRNA:   3'- ccaaCCUGGC-UAu--GUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 65696 0.7 0.80937
Target:  5'- ---gGGACCaggcaaGAaggACAGCgGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG------CUa--UGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 174510 0.7 0.80937
Target:  5'- ---aGGGCCGcgAUGGCCGCGCUg-- -3'
miRNA:   3'- ccaaCCUGGCuaUGUCGGCGCGGugc -5'
14642 3' -56.2 NC_003521.1 + 6084 0.7 0.80937
Target:  5'- ----cGGCCGGUGCGGCgGCguuccGCCACGg -3'
miRNA:   3'- ccaacCUGGCUAUGUCGgCG-----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 98531 0.7 0.817732
Target:  5'- cGGcUGGGCCGcUGCAGCgGCGgCGgGu -3'
miRNA:   3'- -CCaACCUGGCuAUGUCGgCGCgGUgC- -5'
14642 3' -56.2 NC_003521.1 + 53957 0.7 0.825939
Target:  5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3'
miRNA:   3'- ccaACCUGGCUaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 126838 0.7 0.825939
Target:  5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3'
miRNA:   3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.