miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 39267 1.11 0.003958
Target:  5'- cGGUUGGACCGAUACAGCCGCGCCACGu -3'
miRNA:   3'- -CCAACCUGGCUAUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 239495 1.08 0.005902
Target:  5'- cGGUUGGACCGAUACAGCCGCGCCACu -3'
miRNA:   3'- -CCAACCUGGCUAUGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 124449 0.82 0.270684
Target:  5'- uGGUUGGGCCGcgGCGgcacgcguucgccGCCGCGCuCGCGg -3'
miRNA:   3'- -CCAACCUGGCuaUGU-------------CGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 40605 0.77 0.460459
Target:  5'- uGGUagUGcGCCGGUGCAGCCGCuucucGCCGCa -3'
miRNA:   3'- -CCA--ACcUGGCUAUGUCGGCG-----CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 107325 0.77 0.469394
Target:  5'- gGGUUGGGCCccgcaGCAGCgGCGCCAgGu -3'
miRNA:   3'- -CCAACCUGGcua--UGUCGgCGCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 148422 0.76 0.524728
Target:  5'- --aUGGugCGG-GCGGCCGCGCCGgCGg -3'
miRNA:   3'- ccaACCugGCUaUGUCGGCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 56458 0.76 0.534201
Target:  5'- ---aGGuCCGAgagGC-GCCGCGCCACGg -3'
miRNA:   3'- ccaaCCuGGCUa--UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 103659 0.76 0.534201
Target:  5'- cGGcgGcGGCCGcUGCGGCCGCGgCCAUGg -3'
miRNA:   3'- -CCaaC-CUGGCuAUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 123941 0.76 0.534201
Target:  5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3'
miRNA:   3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 110517 0.75 0.582361
Target:  5'- --gUGGACCugGAUGC-GCgGCGCCGCGg -3'
miRNA:   3'- ccaACCUGG--CUAUGuCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 103506 0.74 0.631335
Target:  5'- aGGUgaacucgGGgucGCCGcgcaGCAGCCGCGCCACc -3'
miRNA:   3'- -CCAa------CC---UGGCua--UGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 138327 0.74 0.650975
Target:  5'- --aUGGACC--UGCGGCUGCGCgACGg -3'
miRNA:   3'- ccaACCUGGcuAUGUCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 155922 0.73 0.660778
Target:  5'- --cUGGACCGGgcgcugACGGCCuacucGCGCCACc -3'
miRNA:   3'- ccaACCUGGCUa-----UGUCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 180805 0.73 0.660778
Target:  5'- aGGUgaGGCCGGUGCuGUCGCGCUGCu -3'
miRNA:   3'- -CCAacCUGGCUAUGuCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 184973 0.73 0.67056
Target:  5'- cGGgccagcgUGGACCuGUGCAaggccggccuGCCGCGCUGCGa -3'
miRNA:   3'- -CCa------ACCUGGcUAUGU----------CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 153652 0.73 0.690029
Target:  5'- cGG-UGGAgCGcugcACGGCCGCGCgCACGa -3'
miRNA:   3'- -CCaACCUgGCua--UGUCGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 92638 0.73 0.699702
Target:  5'- --cUGGACuCGGUGCAGCUgguGUGCUACGc -3'
miRNA:   3'- ccaACCUG-GCUAUGUCGG---CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 181938 0.72 0.709321
Target:  5'- ---cGGGCUGcgACucGCCGCGCCACc -3'
miRNA:   3'- ccaaCCUGGCuaUGu-CGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 144117 0.72 0.709321
Target:  5'- --cUGGACCGccGCGGCCuggacgagguGCGCCugGg -3'
miRNA:   3'- ccaACCUGGCuaUGUCGG----------CGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 35036 0.72 0.728372
Target:  5'- cGGUUGGGCaCGcucAUGCcguGCgGCGCCACc -3'
miRNA:   3'- -CCAACCUG-GC---UAUGu--CGgCGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.