miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 201666 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 162367 0.71 0.800859
Target:  5'- ---cGGGCCGcGUuccCAGCCGCGCCGa- -3'
miRNA:   3'- ccaaCCUGGC-UAu--GUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 174510 0.7 0.80937
Target:  5'- ---aGGGCCGcgAUGGCCGCGCUg-- -3'
miRNA:   3'- ccaaCCUGGCuaUGUCGGCGCGGugc -5'
14642 3' -56.2 NC_003521.1 + 6084 0.7 0.80937
Target:  5'- ----cGGCCGGUGCGGCgGCguuccGCCACGg -3'
miRNA:   3'- ccaacCUGGCUAUGUCGgCG-----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 65696 0.7 0.80937
Target:  5'- ---gGGACCaggcaaGAaggACAGCgGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG------CUa--UGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 211824 0.7 0.833983
Target:  5'- cGGUccgggGGACCGucucguucgcGUACGGCaGCGaCCACGa -3'
miRNA:   3'- -CCAa----CCUGGC----------UAUGUCGgCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 59858 0.7 0.833983
Target:  5'- --aUGGGCCGGUcaACGGCgaUGUGCCGCc -3'
miRNA:   3'- ccaACCUGGCUA--UGUCG--GCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 213569 0.7 0.841859
Target:  5'- --gUGcGACCGA--CAGCaGCGCCACGu -3'
miRNA:   3'- ccaAC-CUGGCUauGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 59156 0.69 0.864408
Target:  5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3'
miRNA:   3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 71321 0.71 0.792208
Target:  5'- gGGgcGGcggcguCCGAUACAGCCGCuucuugGCCaACGa -3'
miRNA:   3'- -CCaaCCu-----GGCUAUGUCGGCG------CGG-UGC- -5'
14642 3' -56.2 NC_003521.1 + 5534 0.71 0.792208
Target:  5'- cGGUgacGGcaGCCGGcGCGGCCGCcGCCAUc -3'
miRNA:   3'- -CCAa--CC--UGGCUaUGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 127637 0.72 0.737786
Target:  5'- uGUUGa--CGAUGCAG-CGCGCCACGa -3'
miRNA:   3'- cCAACcugGCUAUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 124449 0.82 0.270684
Target:  5'- uGGUUGGGCCGcgGCGgcacgcguucgccGCCGCGCuCGCGg -3'
miRNA:   3'- -CCAACCUGGCuaUGU-------------CGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 40605 0.77 0.460459
Target:  5'- uGGUagUGcGCCGGUGCAGCCGCuucucGCCGCa -3'
miRNA:   3'- -CCA--ACcUGGCUAUGUCGGCG-----CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 148422 0.76 0.524728
Target:  5'- --aUGGugCGG-GCGGCCGCGCCGgCGg -3'
miRNA:   3'- ccaACCugGCUaUGUCGGCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 56458 0.76 0.534201
Target:  5'- ---aGGuCCGAgagGC-GCCGCGCCACGg -3'
miRNA:   3'- ccaaCCuGGCUa--UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 153652 0.73 0.690029
Target:  5'- cGG-UGGAgCGcugcACGGCCGCGCgCACGa -3'
miRNA:   3'- -CCaACCUgGCua--UGUCGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 144117 0.72 0.709321
Target:  5'- --cUGGACCGccGCGGCCuggacgagguGCGCCugGg -3'
miRNA:   3'- ccaACCUGGCuaUGUCGG----------CGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 35036 0.72 0.728372
Target:  5'- cGGUUGGGCaCGcucAUGCcguGCgGCGCCACc -3'
miRNA:   3'- -CCAACCUG-GC---UAUGu--CGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 129563 0.72 0.736848
Target:  5'- cGGcgGGcCCGAcgauggcUGCuccGCCGCGCCGCGc -3'
miRNA:   3'- -CCaaCCuGGCU-------AUGu--CGGCGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.