miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 951 0.66 0.956983
Target:  5'- uGGaacgUGGuCCGcUGCAGaggaaugggcuuCCGCGCCACc -3'
miRNA:   3'- -CCa---ACCuGGCuAUGUC------------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 1439 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 5534 0.71 0.792208
Target:  5'- cGGUgacGGcaGCCGGcGCGGCCGCcGCCAUc -3'
miRNA:   3'- -CCAa--CC--UGGCUaUGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 6084 0.7 0.80937
Target:  5'- ----cGGCCGGUGCGGCgGCguuccGCCACGg -3'
miRNA:   3'- ccaacCUGGCUAUGUCGgCG-----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 6727 0.69 0.864408
Target:  5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3'
miRNA:   3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 7634 0.67 0.945193
Target:  5'- cGGgaacGACCGAcgguaACGGCgGcCGCCACGg -3'
miRNA:   3'- -CCaac-CUGGCUa----UGUCGgC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 12694 0.66 0.966912
Target:  5'- cGGUUcuacuccaGGACCGA--CGGCUGCuaCGCGc -3'
miRNA:   3'- -CCAA--------CCUGGCUauGUCGGCGcgGUGC- -5'
14642 3' -56.2 NC_003521.1 + 13912 0.67 0.945193
Target:  5'- cGGaggGGGCCGcgGaGGCCGCGCUg-- -3'
miRNA:   3'- -CCaa-CCUGGCuaUgUCGGCGCGGugc -5'
14642 3' -56.2 NC_003521.1 + 14751 0.69 0.885223
Target:  5'- ---cGGGCCGGccGCGGCCGgGgCGCGc -3'
miRNA:   3'- ccaaCCUGGCUa-UGUCGGCgCgGUGC- -5'
14642 3' -56.2 NC_003521.1 + 16962 0.68 0.897454
Target:  5'- --gUGGucCCGAgggACAGCCGCagcagcaGCCGCa -3'
miRNA:   3'- ccaACCu-GGCUa--UGUCGGCG-------CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 18901 0.69 0.857077
Target:  5'- ---aGGcGCCGcgGCAGCCccgaagggugGCGCCGCGc -3'
miRNA:   3'- ccaaCC-UGGCuaUGUCGG----------CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 18975 0.66 0.963803
Target:  5'- aGGaggGGGUCGAggACGcGCCGCGCgACGa -3'
miRNA:   3'- -CCaa-CCUGGCUa-UGU-CGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 23972 0.67 0.945193
Target:  5'- ---cGGGCCuGGaACAGUCGUccGCCGCGg -3'
miRNA:   3'- ccaaCCUGG-CUaUGUCGGCG--CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 24690 0.67 0.936258
Target:  5'- aGG-UGGccuuccucuGCCGcgGCcuCCGCGCCGCGc -3'
miRNA:   3'- -CCaACC---------UGGCuaUGucGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 25984 0.66 0.960495
Target:  5'- cGUcGGGCaCGGUGaugaAGCCgcaGCGCCGCa -3'
miRNA:   3'- cCAaCCUG-GCUAUg---UCGG---CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 26989 0.66 0.953265
Target:  5'- --cUGGGCCGA-ACuGCUGCGaCUACa -3'
miRNA:   3'- ccaACCUGGCUaUGuCGGCGC-GGUGc -5'
14642 3' -56.2 NC_003521.1 + 27679 0.66 0.962831
Target:  5'- --cUGGACCaAcgucuucaguucgcUGCGGCCGCaCCACGc -3'
miRNA:   3'- ccaACCUGGcU--------------AUGUCGGCGcGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 30543 0.7 0.833983
Target:  5'- --gUGGGCaCGGUACGGaCGCGCCGg- -3'
miRNA:   3'- ccaACCUG-GCUAUGUCgGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 32078 0.67 0.949336
Target:  5'- --cUGGcCCGuggccACGGCCaGCGCCAUGc -3'
miRNA:   3'- ccaACCuGGCua---UGUCGG-CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 32303 0.69 0.891755
Target:  5'- --aUGGGCCag-ACAGCUGCGgCGCa -3'
miRNA:   3'- ccaACCUGGcuaUGUCGGCGCgGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.