miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 32859 0.68 0.920674
Target:  5'- gGGUcUGGagGCCGAUcgguuugGCGcCCGCGCCGCc -3'
miRNA:   3'- -CCA-ACC--UGGCUA-------UGUcGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 35036 0.72 0.728372
Target:  5'- cGGUUGGGCaCGcucAUGCcguGCgGCGCCACc -3'
miRNA:   3'- -CCAACCUG-GC---UAUGu--CGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 36765 0.66 0.952108
Target:  5'- --gUGGugCGAcUGCGGCgacuggcagggccaCGCGCUGCGg -3'
miRNA:   3'- ccaACCugGCU-AUGUCG--------------GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 36834 0.67 0.931462
Target:  5'- ---cGGGCCGGcGCuGCUGUGCCGgGu -3'
miRNA:   3'- ccaaCCUGGCUaUGuCGGCGCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 39267 1.11 0.003958
Target:  5'- cGGUUGGACCGAUACAGCCGCGCCACGu -3'
miRNA:   3'- -CCAACCUGGCUAUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 40605 0.77 0.460459
Target:  5'- uGGUagUGcGCCGGUGCAGCCGCuucucGCCGCa -3'
miRNA:   3'- -CCA--ACcUGGCUAUGUCGGCG-----CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 43472 0.67 0.926446
Target:  5'- ---cGGGCCagcGcgGCGGCCGUgcugGCCGCGg -3'
miRNA:   3'- ccaaCCUGG---CuaUGUCGGCG----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 45012 0.67 0.931462
Target:  5'- --cUGGAauCCGAUcccACGGCCGUGCaggGCGa -3'
miRNA:   3'- ccaACCU--GGCUA---UGUCGGCGCGg--UGC- -5'
14642 3' -56.2 NC_003521.1 + 45036 0.68 0.92121
Target:  5'- aGGaaagGGGUCGAg--AGCCGCGCCGCu -3'
miRNA:   3'- -CCaa--CCUGGCUaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 45285 0.66 0.969828
Target:  5'- --aUGGACCGGgcGCcGCUGgGCCAgGa -3'
miRNA:   3'- ccaACCUGGCUa-UGuCGGCgCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 47433 0.69 0.885223
Target:  5'- ---cGGGCCagggcacAUGCAGCCggGCGCCGCa -3'
miRNA:   3'- ccaaCCUGGc------UAUGUCGG--CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 47507 0.67 0.936258
Target:  5'- ---cGGACCgcGAUGCAGCCGUaGCUgaGCa -3'
miRNA:   3'- ccaaCCUGG--CUAUGUCGGCG-CGG--UGc -5'
14642 3' -56.2 NC_003521.1 + 49119 0.66 0.969828
Target:  5'- uGGU--GACCGcgGC-GCCGCuGCUGCGg -3'
miRNA:   3'- -CCAacCUGGCuaUGuCGGCG-CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 49730 0.68 0.904185
Target:  5'- uGG-UGGACgaGAcGCAGCC-CGCCGCc -3'
miRNA:   3'- -CCaACCUGg-CUaUGUCGGcGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 50306 0.7 0.833186
Target:  5'- aGGUUucGGGCCGGUACGGCgCGaaucggaCGCCAa- -3'
miRNA:   3'- -CCAA--CCUGGCUAUGUCG-GC-------GCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 50452 0.66 0.956983
Target:  5'- cGG-UGGACgGAgccgaaAGCCGCGUguCGg -3'
miRNA:   3'- -CCaACCUGgCUaug---UCGGCGCGguGC- -5'
14642 3' -56.2 NC_003521.1 + 51122 0.66 0.953265
Target:  5'- cGGgaGGGCUGGUugagACAGCacgaGCGCaGCGa -3'
miRNA:   3'- -CCaaCCUGGCUA----UGUCGg---CGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 52223 0.67 0.945193
Target:  5'- ---gGGGCCGGUAgGGCgGCggGCUACa -3'
miRNA:   3'- ccaaCCUGGCUAUgUCGgCG--CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 53957 0.7 0.825939
Target:  5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3'
miRNA:   3'- ccaACCUGGCUaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 54156 0.66 0.969545
Target:  5'- cGUUGGAgaggccgccgccuCCGccACcGCCGCGCgACGu -3'
miRNA:   3'- cCAACCU-------------GGCuaUGuCGGCGCGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.