miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 196462 0.69 0.871545
Target:  5'- cGGgcgUGGGCC---GCAGCCccagcGCGUCGCGg -3'
miRNA:   3'- -CCa--ACCUGGcuaUGUCGG-----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 196329 0.72 0.747116
Target:  5'- --aUGGGCCGGUuguuGC-GCUGCGUCACGu -3'
miRNA:   3'- ccaACCUGGCUA----UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 188364 0.69 0.891111
Target:  5'- cGGUgaaagGGAUaaCGcgACAGCCGCaacagaagaaaccGCCACGc -3'
miRNA:   3'- -CCAa----CCUG--GCuaUGUCGGCG-------------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 188138 0.67 0.944767
Target:  5'- cGGcUGGcaccgccgacgcuGCCGGUGCcGCUGCuGCCGCu -3'
miRNA:   3'- -CCaACC-------------UGGCUAUGuCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 187607 0.67 0.945193
Target:  5'- cGG-UGGGCaCGGccUGCcgggcgAGCCGgGCCGCGc -3'
miRNA:   3'- -CCaACCUG-GCU--AUG------UCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 187089 0.67 0.936258
Target:  5'- cGGUUcucgGGACgCGAUGgAGUCGagccagaaGCCACGu -3'
miRNA:   3'- -CCAA----CCUG-GCUAUgUCGGCg-------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 184973 0.73 0.67056
Target:  5'- cGGgccagcgUGGACCuGUGCAaggccggccuGCCGCGCUGCGa -3'
miRNA:   3'- -CCa------ACCUGGcUAUGU----------CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 184480 0.7 0.841859
Target:  5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3'
miRNA:   3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 184358 0.66 0.969828
Target:  5'- cGGgcGGGCCGuggcGCGGCgccucucggaccUGgGCCACGa -3'
miRNA:   3'- -CCaaCCUGGCua--UGUCG------------GCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 181938 0.72 0.709321
Target:  5'- ---cGGGCUGcgACucGCCGCGCCACc -3'
miRNA:   3'- ccaaCCUGGCuaUGu-CGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 181372 0.66 0.969828
Target:  5'- ---cGGAUCGG-ACAGCCuguaGCGCCAg- -3'
miRNA:   3'- ccaaCCUGGCUaUGUCGG----CGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 180805 0.73 0.660778
Target:  5'- aGGUgaGGCCGGUGCuGUCGCGCUGCu -3'
miRNA:   3'- -CCAacCUGGCUAUGuCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 178949 0.69 0.891755
Target:  5'- --cUGGAgCGu--CAGCUGCGaCCACGa -3'
miRNA:   3'- ccaACCUgGCuauGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 178743 0.67 0.940834
Target:  5'- cGGUUGGACUGGU-C-GCaCGUGgCCugGa -3'
miRNA:   3'- -CCAACCUGGCUAuGuCG-GCGC-GGugC- -5'
14642 3' -56.2 NC_003521.1 + 175062 0.66 0.966912
Target:  5'- ---cGGugUGAUGCGGCC-CGUCAgCGu -3'
miRNA:   3'- ccaaCCugGCUAUGUCGGcGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 174510 0.7 0.80937
Target:  5'- ---aGGGCCGcgAUGGCCGCGCUg-- -3'
miRNA:   3'- ccaaCCUGGCuaUGUCGGCGCGGugc -5'
14642 3' -56.2 NC_003521.1 + 172464 0.66 0.956983
Target:  5'- aGGcaGGGCCG--GCAGCggUGCGCCGuCGg -3'
miRNA:   3'- -CCaaCCUGGCuaUGUCG--GCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 172393 0.72 0.747116
Target:  5'- cGGUUGaGgggcGCCGGcGgAGCCGuCGCCGCGg -3'
miRNA:   3'- -CCAAC-C----UGGCUaUgUCGGC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 172078 0.66 0.969828
Target:  5'- ---aGGACCGucaGCGGCgGCGUgAUGa -3'
miRNA:   3'- ccaaCCUGGCua-UGUCGgCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 171312 0.67 0.931462
Target:  5'- cGGUgcUGGGCCucaacGCGGCCuGCGCCGu- -3'
miRNA:   3'- -CCA--ACCUGGcua--UGUCGG-CGCGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.