miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 239495 1.08 0.005902
Target:  5'- cGGUUGGACCGAUACAGCCGCGCCACu -3'
miRNA:   3'- -CCAACCUGGCUAUGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 235270 0.69 0.864408
Target:  5'- cGGacGGAacaaCGAUggcgGCGGCCGCGCCGg- -3'
miRNA:   3'- -CCaaCCUg---GCUA----UGUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 226807 0.67 0.945193
Target:  5'- cGUaGGACCug-ACGGUacaGCGCCAUGg -3'
miRNA:   3'- cCAaCCUGGcuaUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 223797 0.66 0.960495
Target:  5'- --gUGGGCCGccagACgacgGGCCuGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCua--UG----UCGG-CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 223465 0.68 0.904185
Target:  5'- --cUGGGCCGccGC-GCCgGCGUCACGg -3'
miRNA:   3'- ccaACCUGGCuaUGuCGG-CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 223321 0.66 0.958412
Target:  5'- ---cGGGCCGGgaaccgccgugacCGGCgGCGCCGCu -3'
miRNA:   3'- ccaaCCUGGCUau-----------GUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 222181 0.66 0.960495
Target:  5'- ---aGGuCCG-UGCGGCCccaCGCCACGu -3'
miRNA:   3'- ccaaCCuGGCuAUGUCGGc--GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 214991 0.68 0.898076
Target:  5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3'
miRNA:   3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 213711 0.66 0.969828
Target:  5'- --gUGGGCCucgggGAUGCccAGCCagacgGCGCCGCa -3'
miRNA:   3'- ccaACCUGG-----CUAUG--UCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 213569 0.7 0.841859
Target:  5'- --gUGcGACCGA--CAGCaGCGCCACGu -3'
miRNA:   3'- ccaAC-CUGGCUauGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 211824 0.7 0.833983
Target:  5'- cGGUccgggGGACCGucucguucgcGUACGGCaGCGaCCACGa -3'
miRNA:   3'- -CCAa----CCUGGC----------UAUGUCGgCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 211352 0.72 0.737786
Target:  5'- uGGUUGGGgucCCGcaGCAGCCG-GUCGCGg -3'
miRNA:   3'- -CCAACCU---GGCuaUGUCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 208954 0.66 0.960495
Target:  5'- ---cGGugCGGUACcgcucgcaCCGCGCCGCc -3'
miRNA:   3'- ccaaCCugGCUAUGuc------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 208716 0.69 0.891755
Target:  5'- ------cCCGAgauCAGCCGCGCCGCc -3'
miRNA:   3'- ccaaccuGGCUau-GUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 207125 0.66 0.966
Target:  5'- -cUUGGGCgGAgucCAGCUGCagcguuacgugcggGCCACGg -3'
miRNA:   3'- ccAACCUGgCUau-GUCGGCG--------------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 201666 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 200650 0.68 0.904185
Target:  5'- --cUGGACCGGcAC-GCCaacGCGCCGCu -3'
miRNA:   3'- ccaACCUGGCUaUGuCGG---CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 200412 0.69 0.871545
Target:  5'- uGG-UGGAcagcaCCGAguucgACAGCgaggUGCGCCACGa -3'
miRNA:   3'- -CCaACCU-----GGCUa----UGUCG----GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 198606 0.69 0.857077
Target:  5'- aGGUugUGGugCGAUugcgACAGCCGCugGCC-Ca -3'
miRNA:   3'- -CCA--ACCugGCUA----UGUCGGCG--CGGuGc -5'
14642 3' -56.2 NC_003521.1 + 197653 0.66 0.966912
Target:  5'- cGG-UGGcGCUcGUGCGGCagcaGCGCCACc -3'
miRNA:   3'- -CCaACC-UGGcUAUGUCGg---CGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.