miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 51122 0.66 0.953265
Target:  5'- cGGgaGGGCUGGUugagACAGCacgaGCGCaGCGa -3'
miRNA:   3'- -CCaaCCUGGCUA----UGUCGg---CGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 103378 0.66 0.956983
Target:  5'- ----aGACCGugucggGCAGCCGCGCgugcuCGCGg -3'
miRNA:   3'- ccaacCUGGCua----UGUCGGCGCG-----GUGC- -5'
14642 3' -56.2 NC_003521.1 + 222181 0.66 0.960495
Target:  5'- ---aGGuCCG-UGCGGCCccaCGCCACGu -3'
miRNA:   3'- ccaaCCuGGCuAUGUCGGc--GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 134226 0.66 0.953265
Target:  5'- -cUUGG-CCGAguaGCuGcCCGCGCCGCc -3'
miRNA:   3'- ccAACCuGGCUa--UGuC-GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 59422 0.66 0.960495
Target:  5'- --gUGG-CaCGcgACAGCgGCGCCGCc -3'
miRNA:   3'- ccaACCuG-GCuaUGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 54288 0.66 0.960495
Target:  5'- ---aGaGGCCGuUGCGGCUG-GCCACGu -3'
miRNA:   3'- ccaaC-CUGGCuAUGUCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150616 0.66 0.960495
Target:  5'- --gUGGGCUGuUGCGGCgGCuGCUGCGc -3'
miRNA:   3'- ccaACCUGGCuAUGUCGgCG-CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 50452 0.66 0.956983
Target:  5'- cGG-UGGACgGAgccgaaAGCCGCGUguCGg -3'
miRNA:   3'- -CCaACCUGgCUaug---UCGGCGCGguGC- -5'
14642 3' -56.2 NC_003521.1 + 120846 0.66 0.963481
Target:  5'- gGGUgccaugcUGGACuCGGccuugagGCGGCCGCGCguCa -3'
miRNA:   3'- -CCA-------ACCUG-GCUa------UGUCGGCGCGguGc -5'
14642 3' -56.2 NC_003521.1 + 951 0.66 0.956983
Target:  5'- uGGaacgUGGuCCGcUGCAGaggaaugggcuuCCGCGCCACc -3'
miRNA:   3'- -CCa---ACCuGGCuAUGUC------------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 70728 0.66 0.956621
Target:  5'- cGGaUGuACCGGcacuucguccagcUGCAG-CGCGCCGCGg -3'
miRNA:   3'- -CCaACcUGGCU-------------AUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 100678 0.66 0.956983
Target:  5'- uGGUgauagUGGugauGCUGAUGCGGagGCGCCGCc -3'
miRNA:   3'- -CCA-----ACC----UGGCUAUGUCggCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 74159 0.66 0.953265
Target:  5'- ---gGGGCCcaGGUGCcgcuGGCCgacuGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG--CUAUG----UCGG----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150455 0.66 0.963803
Target:  5'- gGGUccuccUGGuCUGggGCGGCgaGCGCCugGu -3'
miRNA:   3'- -CCA-----ACCuGGCuaUGUCGg-CGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 184358 0.66 0.969828
Target:  5'- cGGgcGGGCCGuggcGCGGCgccucucggaccUGgGCCACGa -3'
miRNA:   3'- -CCaaCCUGGCua--UGUCG------------GCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 116796 0.66 0.960495
Target:  5'- --cUGG-CCGucUACGGCCGCGaCCcCGa -3'
miRNA:   3'- ccaACCuGGCu-AUGUCGGCGC-GGuGC- -5'
14642 3' -56.2 NC_003521.1 + 25984 0.66 0.960495
Target:  5'- cGUcGGGCaCGGUGaugaAGCCgcaGCGCCGCa -3'
miRNA:   3'- cCAaCCUG-GCUAUg---UCGG---CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 118750 0.66 0.956983
Target:  5'- aGGUUGcuGgUGAgucgGCGGCCGUGCgCACGu -3'
miRNA:   3'- -CCAACc-UgGCUa---UGUCGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 223797 0.66 0.960495
Target:  5'- --gUGGGCCGccagACgacgGGCCuGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCua--UG----UCGG-CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 99606 0.66 0.960495
Target:  5'- cGUUGGugaccugcagcGCCcg-GCGGCgcaGCGCCACGg -3'
miRNA:   3'- cCAACC-----------UGGcuaUGUCGg--CGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.