miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 39267 1.11 0.003958
Target:  5'- cGGUUGGACCGAUACAGCCGCGCCACGu -3'
miRNA:   3'- -CCAACCUGGCUAUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 172393 0.72 0.747116
Target:  5'- cGGUUGaGgggcGCCGGcGgAGCCGuCGCCGCGg -3'
miRNA:   3'- -CCAAC-C----UGGCUaUgUCGGC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 129651 0.71 0.8
Target:  5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3'
miRNA:   3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 184358 0.66 0.969828
Target:  5'- cGGgcGGGCCGuggcGCGGCgccucucggaccUGgGCCACGa -3'
miRNA:   3'- -CCaaCCUGGCua--UGUCG------------GCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 110517 0.75 0.582361
Target:  5'- --gUGGACCugGAUGC-GCgGCGCCGCGg -3'
miRNA:   3'- ccaACCUGG--CUAUGuCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 103506 0.74 0.631335
Target:  5'- aGGUgaacucgGGgucGCCGcgcaGCAGCCGCGCCACc -3'
miRNA:   3'- -CCAa------CC---UGGCua--UGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 180805 0.73 0.660778
Target:  5'- aGGUgaGGCCGGUGCuGUCGCGCUGCu -3'
miRNA:   3'- -CCAacCUGGCUAUGuCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 155922 0.73 0.660778
Target:  5'- --cUGGACCGGgcgcugACGGCCuacucGCGCCACc -3'
miRNA:   3'- ccaACCUGGCUa-----UGUCGG-----CGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 181938 0.72 0.709321
Target:  5'- ---cGGGCUGcgACucGCCGCGCCACc -3'
miRNA:   3'- ccaaCCUGGCuaUGu-CGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 196329 0.72 0.747116
Target:  5'- --aUGGGCCGGUuguuGC-GCUGCGUCACGu -3'
miRNA:   3'- ccaACCUGGCUA----UGuCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 211352 0.72 0.737786
Target:  5'- uGGUUGGGgucCCGcaGCAGCCG-GUCGCGg -3'
miRNA:   3'- -CCAACCU---GGCuaUGUCGGCgCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 92638 0.73 0.699702
Target:  5'- --cUGGACuCGGUGCAGCUgguGUGCUACGc -3'
miRNA:   3'- ccaACCUG-GCUAUGUCGG---CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 107325 0.77 0.469394
Target:  5'- gGGUUGGGCCccgcaGCAGCgGCGCCAgGu -3'
miRNA:   3'- -CCAACCUGGcua--UGUCGgCGCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 76372 0.72 0.737786
Target:  5'- cGGc--GACCGugACGGCCGCGgCCGCGg -3'
miRNA:   3'- -CCaacCUGGCuaUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 103659 0.76 0.534201
Target:  5'- cGGcgGcGGCCGcUGCGGCCGCGgCCAUGg -3'
miRNA:   3'- -CCaaC-CUGGCuAUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 184973 0.73 0.67056
Target:  5'- cGGgccagcgUGGACCuGUGCAaggccggccuGCCGCGCUGCGa -3'
miRNA:   3'- -CCa------ACCUGGcUAUGU----------CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 110326 0.72 0.747116
Target:  5'- ---aGGGCCaucauGAcGCGGCCGCGCuCGCGg -3'
miRNA:   3'- ccaaCCUGG-----CUaUGUCGGCGCG-GUGC- -5'
14642 3' -56.2 NC_003521.1 + 170665 0.71 0.792208
Target:  5'- --gUGGACUcguGAUagGCAGCCGCGCuCGCc -3'
miRNA:   3'- ccaACCUGG---CUA--UGUCGGCGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 123941 0.76 0.534201
Target:  5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3'
miRNA:   3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 138327 0.74 0.650975
Target:  5'- --aUGGACC--UGCGGCUGCGCgACGg -3'
miRNA:   3'- ccaACCUGGcuAUGUCGGCGCGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.