miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 53957 0.7 0.825939
Target:  5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3'
miRNA:   3'- ccaACCUGGCUaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 129651 0.71 0.8
Target:  5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3'
miRNA:   3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 92638 0.73 0.699702
Target:  5'- --cUGGACuCGGUGCAGCUgguGUGCUACGc -3'
miRNA:   3'- ccaACCUG-GCUAUGUCGG---CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 123941 0.76 0.534201
Target:  5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3'
miRNA:   3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 6727 0.69 0.864408
Target:  5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3'
miRNA:   3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 72732 0.7 0.841859
Target:  5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3'
miRNA:   3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5'
14642 3' -56.2 NC_003521.1 + 172393 0.72 0.747116
Target:  5'- cGGUUGaGgggcGCCGGcGgAGCCGuCGCCGCGg -3'
miRNA:   3'- -CCAAC-C----UGGCUaUgUCGGC-GCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 103659 0.76 0.534201
Target:  5'- cGGcgGcGGCCGcUGCGGCCGCGgCCAUGg -3'
miRNA:   3'- -CCaaC-CUGGCuAUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 184480 0.7 0.841859
Target:  5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3'
miRNA:   3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 107325 0.77 0.469394
Target:  5'- gGGUUGGGCCccgcaGCAGCgGCGCCAgGu -3'
miRNA:   3'- -CCAACCUGGcua--UGUCGgCGCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 170665 0.71 0.792208
Target:  5'- --gUGGACUcguGAUagGCAGCCGCGCuCGCc -3'
miRNA:   3'- ccaACCUGG---CUA--UGUCGGCGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 126838 0.7 0.825939
Target:  5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3'
miRNA:   3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 76372 0.72 0.737786
Target:  5'- cGGc--GACCGugACGGCCGCGgCCGCGg -3'
miRNA:   3'- -CCaacCUGGCuaUGUCGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 181938 0.72 0.709321
Target:  5'- ---cGGGCUGcgACucGCCGCGCCACc -3'
miRNA:   3'- ccaaCCUGGCuaUGu-CGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 180805 0.73 0.660778
Target:  5'- aGGUgaGGCCGGUGCuGUCGCGCUGCu -3'
miRNA:   3'- -CCAacCUGGCUAUGuCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 110517 0.75 0.582361
Target:  5'- --gUGGACCugGAUGC-GCgGCGCCGCGg -3'
miRNA:   3'- ccaACCUGG--CUAUGuCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 200412 0.69 0.871545
Target:  5'- uGG-UGGAcagcaCCGAguucgACAGCgaggUGCGCCACGa -3'
miRNA:   3'- -CCaACCU-----GGCUa----UGUCG----GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 120236 0.69 0.864408
Target:  5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3'
miRNA:   3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 77030 0.69 0.857077
Target:  5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3'
miRNA:   3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 155253 0.7 0.849559
Target:  5'- uGGUgggGGGCgGcgGCGGCgGCGCCuCa -3'
miRNA:   3'- -CCAa--CCUGgCuaUGUCGgCGCGGuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.