miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 50306 0.7 0.833186
Target:  5'- aGGUUucGGGCCGGUACGGCgCGaaucggaCGCCAa- -3'
miRNA:   3'- -CCAA--CCUGGCUAUGUCG-GC-------GCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 59858 0.7 0.833983
Target:  5'- --aUGGGCCGGUcaACGGCgaUGUGCCGCc -3'
miRNA:   3'- ccaACCUGGCUA--UGUCG--GCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 211824 0.7 0.833983
Target:  5'- cGGUccgggGGACCGucucguucgcGUACGGCaGCGaCCACGa -3'
miRNA:   3'- -CCAa----CCUGGC----------UAUGUCGgCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 30543 0.7 0.833983
Target:  5'- --gUGGGCaCGGUACGGaCGCGCCGg- -3'
miRNA:   3'- ccaACCUG-GCUAUGUCgGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 213569 0.7 0.841859
Target:  5'- --gUGcGACCGA--CAGCaGCGCCACGu -3'
miRNA:   3'- ccaAC-CUGGCUauGUCGgCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 72732 0.7 0.841859
Target:  5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3'
miRNA:   3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5'
14642 3' -56.2 NC_003521.1 + 184480 0.7 0.841859
Target:  5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3'
miRNA:   3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5'
14642 3' -56.2 NC_003521.1 + 155253 0.7 0.849559
Target:  5'- uGGUgggGGGCgGcgGCGGCgGCGCCuCa -3'
miRNA:   3'- -CCAa--CCUGgCuaUGUCGgCGCGGuGc -5'
14642 3' -56.2 NC_003521.1 + 77030 0.69 0.857077
Target:  5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3'
miRNA:   3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 18901 0.69 0.857077
Target:  5'- ---aGGcGCCGcgGCAGCCccgaagggugGCGCCGCGc -3'
miRNA:   3'- ccaaCC-UGGCuaUGUCGG----------CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 198606 0.69 0.857077
Target:  5'- aGGUugUGGugCGAUugcgACAGCCGCugGCC-Ca -3'
miRNA:   3'- -CCA--ACCugGCUA----UGUCGGCG--CGGuGc -5'
14642 3' -56.2 NC_003521.1 + 6727 0.69 0.864408
Target:  5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3'
miRNA:   3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5'
14642 3' -56.2 NC_003521.1 + 235270 0.69 0.864408
Target:  5'- cGGacGGAacaaCGAUggcgGCGGCCGCGCCGg- -3'
miRNA:   3'- -CCaaCCUg---GCUA----UGUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 1439 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 120236 0.69 0.864408
Target:  5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3'
miRNA:   3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 59156 0.69 0.864408
Target:  5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3'
miRNA:   3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 98472 0.69 0.864408
Target:  5'- cGGcgGcGGCCGcgGCGGCCGUgGCgGCGg -3'
miRNA:   3'- -CCaaC-CUGGCuaUGUCGGCG-CGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 201666 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 196462 0.69 0.871545
Target:  5'- cGGgcgUGGGCC---GCAGCCccagcGCGUCGCGg -3'
miRNA:   3'- -CCa--ACCUGGcuaUGUCGG-----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 135765 0.69 0.871545
Target:  5'- ---gGGACCGAaggcgguggcgGCAGUgGCGCUGCGg -3'
miRNA:   3'- ccaaCCUGGCUa----------UGUCGgCGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.