miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 100678 0.66 0.956983
Target:  5'- uGGUgauagUGGugauGCUGAUGCGGagGCGCCGCc -3'
miRNA:   3'- -CCA-----ACC----UGGCUAUGUCggCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 50452 0.66 0.956983
Target:  5'- cGG-UGGACgGAgccgaaAGCCGCGUguCGg -3'
miRNA:   3'- -CCaACCUGgCUaug---UCGGCGCGguGC- -5'
14642 3' -56.2 NC_003521.1 + 951 0.66 0.956983
Target:  5'- uGGaacgUGGuCCGcUGCAGaggaaugggcuuCCGCGCCACc -3'
miRNA:   3'- -CCa---ACCuGGCuAUGUC------------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 70728 0.66 0.956621
Target:  5'- cGGaUGuACCGGcacuucguccagcUGCAG-CGCGCCGCGg -3'
miRNA:   3'- -CCaACcUGGCU-------------AUGUCgGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 26989 0.66 0.953265
Target:  5'- --cUGGGCCGA-ACuGCUGCGaCUACa -3'
miRNA:   3'- ccaACCUGGCUaUGuCGGCGC-GGUGc -5'
14642 3' -56.2 NC_003521.1 + 51122 0.66 0.953265
Target:  5'- cGGgaGGGCUGGUugagACAGCacgaGCGCaGCGa -3'
miRNA:   3'- -CCaaCCUGGCUA----UGUCGg---CGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 74159 0.66 0.953265
Target:  5'- ---gGGGCCcaGGUGCcgcuGGCCgacuGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG--CUAUG----UCGG----CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 134226 0.66 0.953265
Target:  5'- -cUUGG-CCGAguaGCuGcCCGCGCCGCc -3'
miRNA:   3'- ccAACCuGGCUa--UGuC-GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 141794 0.66 0.953265
Target:  5'- ---cGGACCGGcccGgAGCCGgCGCCAUc -3'
miRNA:   3'- ccaaCCUGGCUa--UgUCGGC-GCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 36765 0.66 0.952108
Target:  5'- --gUGGugCGAcUGCGGCgacuggcagggccaCGCGCUGCGg -3'
miRNA:   3'- ccaACCugGCU-AUGUCG--------------GCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 150812 0.67 0.949336
Target:  5'- gGGgcgcUGGACCGAaACAacguguccccGCaGCGCCACc -3'
miRNA:   3'- -CCa---ACCUGGCUaUGU----------CGgCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 166793 0.67 0.949336
Target:  5'- gGGUcGGA-CGAUGCcGCCGcCGCUGCu -3'
miRNA:   3'- -CCAaCCUgGCUAUGuCGGC-GCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 32078 0.67 0.949336
Target:  5'- --cUGGcCCGuggccACGGCCaGCGCCAUGc -3'
miRNA:   3'- ccaACCuGGCua---UGUCGG-CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 91508 0.67 0.945193
Target:  5'- aGGcgUGaGACCacgGCGGCCGCGUCGuCGc -3'
miRNA:   3'- -CCa-AC-CUGGcuaUGUCGGCGCGGU-GC- -5'
14642 3' -56.2 NC_003521.1 + 89848 0.67 0.945193
Target:  5'- -----aGCCGAUGuCGGCCGCcagcGCCGCGu -3'
miRNA:   3'- ccaaccUGGCUAU-GUCGGCG----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 13912 0.67 0.945193
Target:  5'- cGGaggGGGCCGcgGaGGCCGCGCUg-- -3'
miRNA:   3'- -CCaa-CCUGGCuaUgUCGGCGCGGugc -5'
14642 3' -56.2 NC_003521.1 + 226807 0.67 0.945193
Target:  5'- cGUaGGACCug-ACGGUacaGCGCCAUGg -3'
miRNA:   3'- cCAaCCUGGcuaUGUCGg--CGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 52223 0.67 0.945193
Target:  5'- ---gGGGCCGGUAgGGCgGCggGCUACa -3'
miRNA:   3'- ccaaCCUGGCUAUgUCGgCG--CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 23972 0.67 0.945193
Target:  5'- ---cGGGCCuGGaACAGUCGUccGCCGCGg -3'
miRNA:   3'- ccaaCCUGG-CUaUGUCGGCG--CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 7634 0.67 0.945193
Target:  5'- cGGgaacGACCGAcgguaACGGCgGcCGCCACGg -3'
miRNA:   3'- -CCaac-CUGGCUa----UGUCGgC-GCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.