miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 3' -56.2 NC_003521.1 + 52223 0.67 0.945193
Target:  5'- ---gGGGCCGGUAgGGCgGCggGCUACa -3'
miRNA:   3'- ccaaCCUGGCUAUgUCGgCG--CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 188138 0.67 0.944767
Target:  5'- cGGcUGGcaccgccgacgcuGCCGGUGCcGCUGCuGCCGCu -3'
miRNA:   3'- -CCaACC-------------UGGCUAUGuCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 116367 0.67 0.940835
Target:  5'- ---cGaGGCCGAgcugcUGCuGCCGCGCgACGu -3'
miRNA:   3'- ccaaC-CUGGCU-----AUGuCGGCGCGgUGC- -5'
14642 3' -56.2 NC_003521.1 + 60664 0.67 0.940835
Target:  5'- aGUgGGGCaCGAUGCucuucguGCUGCGgCCGCGc -3'
miRNA:   3'- cCAaCCUG-GCUAUGu------CGGCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 178743 0.67 0.940834
Target:  5'- cGGUUGGACUGGU-C-GCaCGUGgCCugGa -3'
miRNA:   3'- -CCAACCUGGCUAuGuCG-GCGC-GGugC- -5'
14642 3' -56.2 NC_003521.1 + 92396 0.67 0.940834
Target:  5'- --cUGGagccGCCGGcGCGGCCGC-CCGCa -3'
miRNA:   3'- ccaACC----UGGCUaUGUCGGCGcGGUGc -5'
14642 3' -56.2 NC_003521.1 + 168608 0.67 0.938115
Target:  5'- --aUGGGCUGcugggcGUGCGccaucugcuguugcuGCUGCGCCACGg -3'
miRNA:   3'- ccaACCUGGC------UAUGU---------------CGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 187089 0.67 0.936258
Target:  5'- cGGUUcucgGGACgCGAUGgAGUCGagccagaaGCCACGu -3'
miRNA:   3'- -CCAA----CCUG-GCUAUgUCGGCg-------CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 47507 0.67 0.936258
Target:  5'- ---cGGACCgcGAUGCAGCCGUaGCUgaGCa -3'
miRNA:   3'- ccaaCCUGG--CUAUGUCGGCG-CGG--UGc -5'
14642 3' -56.2 NC_003521.1 + 24690 0.67 0.936258
Target:  5'- aGG-UGGccuuccucuGCCGcgGCcuCCGCGCCGCGc -3'
miRNA:   3'- -CCaACC---------UGGCuaUGucGGCGCGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 142356 0.67 0.936258
Target:  5'- ----cGGCCGccGCGGCCGCcGCCGCc -3'
miRNA:   3'- ccaacCUGGCuaUGUCGGCG-CGGUGc -5'
14642 3' -56.2 NC_003521.1 + 36834 0.67 0.931462
Target:  5'- ---cGGGCCGGcGCuGCUGUGCCGgGu -3'
miRNA:   3'- ccaaCCUGGCUaUGuCGGCGCGGUgC- -5'
14642 3' -56.2 NC_003521.1 + 171312 0.67 0.931462
Target:  5'- cGGUgcUGGGCCucaacGCGGCCuGCGCCGu- -3'
miRNA:   3'- -CCA--ACCUGGcua--UGUCGG-CGCGGUgc -5'
14642 3' -56.2 NC_003521.1 + 45012 0.67 0.931462
Target:  5'- --cUGGAauCCGAUcccACGGCCGUGCaggGCGa -3'
miRNA:   3'- ccaACCU--GGCUA---UGUCGGCGCGg--UGC- -5'
14642 3' -56.2 NC_003521.1 + 78134 0.67 0.931462
Target:  5'- uGG-UGGGCgCGuuaGCGGCgGCGgCCGCGa -3'
miRNA:   3'- -CCaACCUG-GCua-UGUCGgCGC-GGUGC- -5'
14642 3' -56.2 NC_003521.1 + 133003 0.67 0.931462
Target:  5'- gGGUUgGGACgGggACAGCCGCcaccGgCACa -3'
miRNA:   3'- -CCAA-CCUGgCuaUGUCGGCG----CgGUGc -5'
14642 3' -56.2 NC_003521.1 + 43472 0.67 0.926446
Target:  5'- ---cGGGCCagcGcgGCGGCCGUgcugGCCGCGg -3'
miRNA:   3'- ccaaCCUGG---CuaUGUCGGCG----CGGUGC- -5'
14642 3' -56.2 NC_003521.1 + 59648 0.67 0.926446
Target:  5'- cGUUGGugCGGcagacGCuGgCGCGCCugGa -3'
miRNA:   3'- cCAACCugGCUa----UGuCgGCGCGGugC- -5'
14642 3' -56.2 NC_003521.1 + 156916 0.67 0.926446
Target:  5'- ---cGGGCCGGaGCGGgggacuUCGCGCCACc -3'
miRNA:   3'- ccaaCCUGGCUaUGUC------GGCGCGGUGc -5'
14642 3' -56.2 NC_003521.1 + 63069 0.67 0.925932
Target:  5'- ----cGACCGcgaccccGUACAGCUGCGCCGgCGc -3'
miRNA:   3'- ccaacCUGGC-------UAUGUCGGCGCGGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.