Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14642 | 3' | -56.2 | NC_003521.1 | + | 56319 | 0.66 | 0.963803 |
Target: 5'- --aUGGAugaagaccaCCGAggcGCGGCCGCGCaggGCGc -3' miRNA: 3'- ccaACCU---------GGCUa--UGUCGGCGCGg--UGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 113363 | 0.66 | 0.963803 |
Target: 5'- cGGgccgGGGgCGAggaggaggguUACGGCgGaCGCCGCGg -3' miRNA: 3'- -CCaa--CCUgGCU----------AUGUCGgC-GCGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 18975 | 0.66 | 0.963803 |
Target: 5'- aGGaggGGGUCGAggACGcGCCGCGCgACGa -3' miRNA: 3'- -CCaa-CCUGGCUa-UGU-CGGCGCGgUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 128130 | 0.66 | 0.963803 |
Target: 5'- ---gGGuCCGAggGCGGcCCGCGCUcgGCGa -3' miRNA: 3'- ccaaCCuGGCUa-UGUC-GGCGCGG--UGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 120846 | 0.66 | 0.963481 |
Target: 5'- gGGUgccaugcUGGACuCGGccuugagGCGGCCGCGCguCa -3' miRNA: 3'- -CCA-------ACCUG-GCUa------UGUCGGCGCGguGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 27679 | 0.66 | 0.962831 |
Target: 5'- --cUGGACCaAcgucuucaguucgcUGCGGCCGCaCCACGc -3' miRNA: 3'- ccaACCUGGcU--------------AUGUCGGCGcGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 222181 | 0.66 | 0.960495 |
Target: 5'- ---aGGuCCG-UGCGGCCccaCGCCACGu -3' miRNA: 3'- ccaaCCuGGCuAUGUCGGc--GCGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 208954 | 0.66 | 0.960495 |
Target: 5'- ---cGGugCGGUACcgcucgcaCCGCGCCGCc -3' miRNA: 3'- ccaaCCugGCUAUGuc------GGCGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 99606 | 0.66 | 0.960495 |
Target: 5'- cGUUGGugaccugcagcGCCcg-GCGGCgcaGCGCCACGg -3' miRNA: 3'- cCAACC-----------UGGcuaUGUCGg--CGCGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 25984 | 0.66 | 0.960495 |
Target: 5'- cGUcGGGCaCGGUGaugaAGCCgcaGCGCCGCa -3' miRNA: 3'- cCAaCCUG-GCUAUg---UCGG---CGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 223797 | 0.66 | 0.960495 |
Target: 5'- --gUGGGCCGccagACgacgGGCCuGCGCCGCc -3' miRNA: 3'- ccaACCUGGCua--UG----UCGG-CGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 150616 | 0.66 | 0.960495 |
Target: 5'- --gUGGGCUGuUGCGGCgGCuGCUGCGc -3' miRNA: 3'- ccaACCUGGCuAUGUCGgCG-CGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 116796 | 0.66 | 0.960495 |
Target: 5'- --cUGG-CCGucUACGGCCGCGaCCcCGa -3' miRNA: 3'- ccaACCuGGCu-AUGUCGGCGC-GGuGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 59422 | 0.66 | 0.960495 |
Target: 5'- --gUGG-CaCGcgACAGCgGCGCCGCc -3' miRNA: 3'- ccaACCuG-GCuaUGUCGgCGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 54288 | 0.66 | 0.960495 |
Target: 5'- ---aGaGGCCGuUGCGGCUG-GCCACGu -3' miRNA: 3'- ccaaC-CUGGCuAUGUCGGCgCGGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 223321 | 0.66 | 0.958412 |
Target: 5'- ---cGGGCCGGgaaccgccgugacCGGCgGCGCCGCu -3' miRNA: 3'- ccaaCCUGGCUau-----------GUCGgCGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 172464 | 0.66 | 0.956983 |
Target: 5'- aGGcaGGGCCG--GCAGCggUGCGCCGuCGg -3' miRNA: 3'- -CCaaCCUGGCuaUGUCG--GCGCGGU-GC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 100678 | 0.66 | 0.956983 |
Target: 5'- uGGUgauagUGGugauGCUGAUGCGGagGCGCCGCc -3' miRNA: 3'- -CCA-----ACC----UGGCUAUGUCggCGCGGUGc -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 115511 | 0.66 | 0.956983 |
Target: 5'- uGGccGGACCc--ACcGCCGCGuCCGCGa -3' miRNA: 3'- -CCaaCCUGGcuaUGuCGGCGC-GGUGC- -5' |
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14642 | 3' | -56.2 | NC_003521.1 | + | 118750 | 0.66 | 0.956983 |
Target: 5'- aGGUUGcuGgUGAgucgGCGGCCGUGCgCACGu -3' miRNA: 3'- -CCAACc-UgGCUa---UGUCGGCGCG-GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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