miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 170296 0.68 0.952744
Target:  5'- gGCCGgccgAGCGcGAGgCGgucaCGUCGGUGUu -3'
miRNA:   3'- -CGGCa---UCGC-CUUgGUaa--GCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 212073 0.68 0.946247
Target:  5'- gGCgGUGGCGcGGCCcgcgcgcgucuggUUGUCGGCGUg -3'
miRNA:   3'- -CGgCAUCGCcUUGGua-----------AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 130088 0.68 0.944967
Target:  5'- gGCCG-AGUGGAacugccagcugccggGCCucuucugccccugcgUCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCU---------------UGGua-------------AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 36515 0.68 0.944536
Target:  5'- cGUCGgacuGCGGucacccGCCggUCGUCGGCa- -3'
miRNA:   3'- -CGGCau--CGCCu-----UGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 219741 0.68 0.944536
Target:  5'- cGCCGUcGCGGGACCA---GUCuGUGUc -3'
miRNA:   3'- -CGGCAuCGCCUUGGUaagCAGcCGCA- -5'
14642 5' -54.9 NC_003521.1 + 200407 0.68 0.944536
Target:  5'- gGCCGUGGUGGAcagcACCgaGUUCGaCaGCGa -3'
miRNA:   3'- -CGGCAUCGCCU----UGG--UAAGCaGcCGCa -5'
14642 5' -54.9 NC_003521.1 + 108970 0.68 0.942789
Target:  5'- gGCCGUGGCcgccuuGAACCAgcccacguugacgUUGUUGGUGUg -3'
miRNA:   3'- -CGGCAUCGc-----CUUGGUa------------AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 45685 0.68 0.940102
Target:  5'- gGCCGgacaccgAGCGGAcACCGUacCG-CGGCGa -3'
miRNA:   3'- -CGGCa------UCGCCU-UGGUAa-GCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 187197 0.68 0.940102
Target:  5'- cGCCugcauCGGGGaCAUUCGUCGGCGg -3'
miRNA:   3'- -CGGcauc-GCCUUgGUAAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 14236 0.68 0.940102
Target:  5'- --aGUGGCGGAACagg-CGUCGGUa- -3'
miRNA:   3'- cggCAUCGCCUUGguaaGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 37009 0.68 0.940102
Target:  5'- cGUCGcGGCGGAgucaggACCGacaggaguccUCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCU------UGGUa---------AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 77593 0.68 0.940102
Target:  5'- cGCCGUGGCcGAACCca-CGUCaccgGGCGc -3'
miRNA:   3'- -CGGCAUCGcCUUGGuaaGCAG----CCGCa -5'
14642 5' -54.9 NC_003521.1 + 36964 0.68 0.935446
Target:  5'- cGUCGcAGCGGAGCgGgugcUCGgCGGCGa -3'
miRNA:   3'- -CGGCaUCGCCUUGgUa---AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 172302 0.68 0.935446
Target:  5'- cGCCGUccggugucGGUGGcGCCAggccggUCG-CGGCGg -3'
miRNA:   3'- -CGGCA--------UCGCCuUGGUa-----AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 123609 0.68 0.935446
Target:  5'- gGCCGUcAGCGGGugcgacaucuccACCGccUCGggCGGCGg -3'
miRNA:   3'- -CGGCA-UCGCCU------------UGGUa-AGCa-GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 221731 0.68 0.935446
Target:  5'- gGCCGUcugggugaucaAGCGGAACgAcagCGUCaGCGUc -3'
miRNA:   3'- -CGGCA-----------UCGCCUUGgUaa-GCAGcCGCA- -5'
14642 5' -54.9 NC_003521.1 + 89842 0.68 0.935446
Target:  5'- cGCCGUAGCcGAugucggccGCCAgcgccgCGUCGcGCGa -3'
miRNA:   3'- -CGGCAUCGcCU--------UGGUaa----GCAGC-CGCa -5'
14642 5' -54.9 NC_003521.1 + 126568 0.68 0.935446
Target:  5'- gGCCGUgggcAGCGGGaaGCCGccgUCGUgcCGGUGg -3'
miRNA:   3'- -CGGCA----UCGCCU--UGGUa--AGCA--GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 91560 0.69 0.930567
Target:  5'- cGCCGacGCGGAacgacaugGCCAcgUCGUaGGCGUa -3'
miRNA:   3'- -CGGCauCGCCU--------UGGUa-AGCAgCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 160328 0.69 0.930567
Target:  5'- aGCCGUgGGCGGcgcgguGGCCuccgUCGUCgagGGCGUc -3'
miRNA:   3'- -CGGCA-UCGCC------UUGGua--AGCAG---CCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.