miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 18726 0.67 0.972343
Target:  5'- uGCCGcUGGCGGcGgCGaUCGUggCGGCGg -3'
miRNA:   3'- -CGGC-AUCGCCuUgGUaAGCA--GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 228242 0.67 0.972343
Target:  5'- gGUCGUGGUGGGugccGCCGUggUgGUCGGUu- -3'
miRNA:   3'- -CGGCAUCGCCU----UGGUA--AgCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 108004 0.67 0.969574
Target:  5'- aGCuCGgaGGCGaaAACCAcgccUUCGUCGGCGUc -3'
miRNA:   3'- -CG-GCa-UCGCc-UUGGU----AAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 193447 0.67 0.969574
Target:  5'- cGCCc---UGGGACCcUUCGUCGGCa- -3'
miRNA:   3'- -CGGcaucGCCUUGGuAAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 70337 0.67 0.969574
Target:  5'- cGCCGUccAGCaGGGCguUgagcUUGUCGGCGg -3'
miRNA:   3'- -CGGCA--UCGcCUUGguA----AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 77220 0.67 0.969574
Target:  5'- uGCCGUucuccAGCGuGAcGCUGUagaCGUCGGCGg -3'
miRNA:   3'- -CGGCA-----UCGC-CU-UGGUAa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 164121 0.67 0.966613
Target:  5'- cGCCGccGGUGccaccgcuacacGGACCcgUCGUCGGCu- -3'
miRNA:   3'- -CGGCa-UCGC------------CUUGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 224863 0.67 0.966613
Target:  5'- gGCCGUAGCGc-GCCAgcUCGUCcaGGUGc -3'
miRNA:   3'- -CGGCAUCGCcuUGGUa-AGCAG--CCGCa -5'
14642 5' -54.9 NC_003521.1 + 226288 0.67 0.966613
Target:  5'- gGCCGUGGCGuacGAGCCc-UCGggcgUGGUGUc -3'
miRNA:   3'- -CGGCAUCGC---CUUGGuaAGCa---GCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 172470 0.67 0.966613
Target:  5'- gGCCGgcAGCGGuGCgc--CGUCGGCGg -3'
miRNA:   3'- -CGGCa-UCGCCuUGguaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 132476 0.67 0.963455
Target:  5'- aGCCGUcuuCGGAGaCCGc-CGUCGGCGc -3'
miRNA:   3'- -CGGCAuc-GCCUU-GGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 169570 0.67 0.963455
Target:  5'- cGCCGauguUGGCGGGAUCGUggCGUCuGUGc -3'
miRNA:   3'- -CGGC----AUCGCCUUGGUAa-GCAGcCGCa -5'
14642 5' -54.9 NC_003521.1 + 91922 0.67 0.963455
Target:  5'- uGCCGcGGCGGcgcuCCucggCGUCGGCc- -3'
miRNA:   3'- -CGGCaUCGCCuu--GGuaa-GCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 89626 0.67 0.960093
Target:  5'- aCCGUGGUGGuGACCGU-CG-CGGCc- -3'
miRNA:   3'- cGGCAUCGCC-UUGGUAaGCaGCCGca -5'
14642 5' -54.9 NC_003521.1 + 111244 0.67 0.960093
Target:  5'- gGCCGgcGCGGcgcggcggagcAGCCA-UCGUCGGg-- -3'
miRNA:   3'- -CGGCauCGCC-----------UUGGUaAGCAGCCgca -5'
14642 5' -54.9 NC_003521.1 + 116674 0.67 0.960093
Target:  5'- aGCCGccGCuGuuGCCcgUCGUCGGUGg -3'
miRNA:   3'- -CGGCauCGcCu-UGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 38013 0.67 0.956524
Target:  5'- cGCUGaGGCGGGuUUGUUCGaCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCUuGGUAAGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 164682 0.67 0.956524
Target:  5'- cGCCGUGuGCGcgucgaGGACCuggugcugUCGUCGGUGc -3'
miRNA:   3'- -CGGCAU-CGC------CUUGGua------AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 82031 0.67 0.955413
Target:  5'- -aCGUAGCGGGuGCUAUggguguuggaguagUCGUCGGgGa -3'
miRNA:   3'- cgGCAUCGCCU-UGGUA--------------AGCAGCCgCa -5'
14642 5' -54.9 NC_003521.1 + 170296 0.68 0.952744
Target:  5'- gGCCGgccgAGCGcGAGgCGgucaCGUCGGUGUu -3'
miRNA:   3'- -CGGCa---UCGC-CUUgGUaa--GCAGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.