miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 135646 0.7 0.869611
Target:  5'- aUCGgcGgGGGGCCcagCGUCGGCGg -3'
miRNA:   3'- cGGCauCgCCUUGGuaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 223739 0.7 0.875972
Target:  5'- uCCgGUGGCGGGaacgugggucgccGCCAgcgguaUCGUCGGCGc -3'
miRNA:   3'- cGG-CAUCGCCU-------------UGGUa-----AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 139760 0.7 0.876669
Target:  5'- uGCCGacGGCaGGAuCCGgcCGUCGGCGg -3'
miRNA:   3'- -CGGCa-UCG-CCUuGGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 129115 0.7 0.883522
Target:  5'- uGCCGgcGCacGGACUGgaCGUCGGCGUc -3'
miRNA:   3'- -CGGCauCGc-CUUGGUaaGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 116714 0.7 0.890167
Target:  5'- cGCCGUccacuuccacGGCGGucCCGga-GUCGGCGc -3'
miRNA:   3'- -CGGCA----------UCGCCuuGGUaagCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 198271 0.7 0.896598
Target:  5'- aGCCGUcccAGCGGcACCAgcagUCaUCGGgGUg -3'
miRNA:   3'- -CGGCA---UCGCCuUGGUa---AGcAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 163408 0.69 0.902813
Target:  5'- gGCCGUGGC----CCcgUCGUCGGCu- -3'
miRNA:   3'- -CGGCAUCGccuuGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 50450 0.69 0.908809
Target:  5'- aGCgGUGGaCGGAGCCGaaagccgcgUGUCGGUGa -3'
miRNA:   3'- -CGgCAUC-GCCUUGGUaa-------GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 225663 0.69 0.908809
Target:  5'- uGUCGUAGCGGugcagcACCAaggCGUUGGgGUc -3'
miRNA:   3'- -CGGCAUCGCCu-----UGGUaa-GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 149697 0.69 0.908809
Target:  5'- aGCUGaGGUGGAGCCcUgugagcucUCGcUCGGCGUg -3'
miRNA:   3'- -CGGCaUCGCCUUGGuA--------AGC-AGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 113979 0.69 0.914583
Target:  5'- aGCUGUuccuGGCGGuGCaGUUCGUgGGCGa -3'
miRNA:   3'- -CGGCA----UCGCCuUGgUAAGCAgCCGCa -5'
14642 5' -54.9 NC_003521.1 + 127226 0.69 0.916831
Target:  5'- cGCUGgcGCGGugguccuccacgaagAGCgGcUCGUCGGCGUc -3'
miRNA:   3'- -CGGCauCGCC---------------UUGgUaAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 210748 0.69 0.917941
Target:  5'- gGCCGUGGCGGGGCaCAUgaacaguuccccgCGUgGGUu- -3'
miRNA:   3'- -CGGCAUCGCCUUG-GUAa------------GCAgCCGca -5'
14642 5' -54.9 NC_003521.1 + 37203 0.69 0.920135
Target:  5'- aGCCGUAaccCGGGACUGUUCuucagCGGCGa -3'
miRNA:   3'- -CGGCAUc--GCCUUGGUAAGca---GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 52670 0.69 0.920135
Target:  5'- aGCgGcagcAGCGGcACCGgcagCGUCGGCGg -3'
miRNA:   3'- -CGgCa---UCGCCuUGGUaa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 99546 0.69 0.925463
Target:  5'- uGCCGcAGCGGuagguGCCcauggcgUUGUUGGCGUc -3'
miRNA:   3'- -CGGCaUCGCCu----UGGua-----AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 126957 0.69 0.925463
Target:  5'- uGCCGccGCGGAACCcgcgccgUCGUCGcCGg -3'
miRNA:   3'- -CGGCauCGCCUUGGua-----AGCAGCcGCa -5'
14642 5' -54.9 NC_003521.1 + 234734 0.69 0.925463
Target:  5'- aGCCGUGGCGGAacgccgccgcACCGgcCGUC-GCa- -3'
miRNA:   3'- -CGGCAUCGCCU----------UGGUaaGCAGcCGca -5'
14642 5' -54.9 NC_003521.1 + 160328 0.69 0.930567
Target:  5'- aGCCGUgGGCGGcgcgguGGCCuccgUCGUCgagGGCGUc -3'
miRNA:   3'- -CGGCA-UCGCC------UUGGua--AGCAG---CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 91560 0.69 0.930567
Target:  5'- cGCCGacGCGGAacgacaugGCCAcgUCGUaGGCGUa -3'
miRNA:   3'- -CGGCauCGCCU--------UGGUa-AGCAgCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.