miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 239528 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 39301 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 233179 0.81 0.362617
Target:  5'- cGCCGUGGCGGccGCCGUUacCGUCGGuCGUu -3'
miRNA:   3'- -CGGCAUCGCCu-UGGUAA--GCAGCC-GCA- -5'
14642 5' -54.9 NC_003521.1 + 123453 0.78 0.500025
Target:  5'- cGCCGUAGCgGGGACCGcggGUUGGCGa -3'
miRNA:   3'- -CGGCAUCG-CCUUGGUaagCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 195195 0.77 0.547603
Target:  5'- aGCCGgcGGCGGuGGCCGUcugCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCC-UUGGUAa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 192262 0.76 0.567046
Target:  5'- aGCCGUcaccuucaccAGCGGcgucuccacGCCGUUCGUCGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCCu--------UGGUAAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 17011 0.75 0.654943
Target:  5'- cGCgGUGGCGGcggcgcaGGCCcgUCGUCuGGCGg -3'
miRNA:   3'- -CGgCAUCGCC-------UUGGuaAGCAG-CCGCa -5'
14642 5' -54.9 NC_003521.1 + 180655 0.75 0.655932
Target:  5'- uCUGUAGCGGcuCCAggCGUUGGCGc -3'
miRNA:   3'- cGGCAUCGCCuuGGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 116466 0.74 0.69528
Target:  5'- gGCCGUGGUGGGACaCGUgg--CGGCGa -3'
miRNA:   3'- -CGGCAUCGCCUUG-GUAagcaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 237973 0.73 0.724298
Target:  5'- cGUCGaGGUcGAACCAggcgUCGUCGGCGa -3'
miRNA:   3'- -CGGCaUCGcCUUGGUa---AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 91034 0.73 0.743285
Target:  5'- gGCCGUucGCGGAacGCCGUggCGUUgaGGCGUa -3'
miRNA:   3'- -CGGCAu-CGCCU--UGGUAa-GCAG--CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 94940 0.73 0.752646
Target:  5'- cGCCGccGGCGGc-CUcgUCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCCuuGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 192181 0.72 0.78901
Target:  5'- cGCCGgucGCGGccacACCGguuuggguUUCGUCGGCGg -3'
miRNA:   3'- -CGGCau-CGCCu---UGGU--------AAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 127298 0.72 0.78901
Target:  5'- cGCCGUGGUGGcgcGCCucgaUGUUGGCGUu -3'
miRNA:   3'- -CGGCAUCGCCu--UGGuaa-GCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 23629 0.71 0.823257
Target:  5'- cGCCGUggccugccugGGCGGcaugGACCGUcgUCGUUGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCC----UUGGUA--AGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 171655 0.71 0.83143
Target:  5'- cGCCGcGGCGGGcguCgGgagCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCUu--GgUaa-GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 135008 0.71 0.839432
Target:  5'- gGCCGUGGCGucGCCcUUC-UCGGUGa -3'
miRNA:   3'- -CGGCAUCGCcuUGGuAAGcAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 179068 0.71 0.847257
Target:  5'- -gCGUcAGCGGGucgcguGCCcgUCGUCGGUGa -3'
miRNA:   3'- cgGCA-UCGCCU------UGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 77707 0.7 0.869611
Target:  5'- aGCCGUGGCGGcg----UUGUUGGCGa -3'
miRNA:   3'- -CGGCAUCGCCuugguaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 105943 0.7 0.869611
Target:  5'- gGCCGgcGCGGAugaugACCGUgUGUCGG-GUg -3'
miRNA:   3'- -CGGCauCGCCU-----UGGUAaGCAGCCgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.