miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 33 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 6870 0.66 0.977327
Target:  5'- --gGUAGCGGAuCCGU-CGUCGuCGUg -3'
miRNA:   3'- cggCAUCGCCUuGGUAaGCAGCcGCA- -5'
14642 5' -54.9 NC_003521.1 + 12546 0.66 0.983517
Target:  5'- cGCCGUGGaGGAcGCCGagCGUCuggagaugcccgGGCGUu -3'
miRNA:   3'- -CGGCAUCgCCU-UGGUaaGCAG------------CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 14236 0.68 0.940102
Target:  5'- --aGUGGCGGAACagg-CGUCGGUa- -3'
miRNA:   3'- cggCAUCGCCUUGguaaGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 17011 0.75 0.654943
Target:  5'- cGCgGUGGCGGcggcgcaGGCCcgUCGUCuGGCGg -3'
miRNA:   3'- -CGgCAUCGCC-------UUGGuaAGCAG-CCGCa -5'
14642 5' -54.9 NC_003521.1 + 18726 0.67 0.972343
Target:  5'- uGCCGcUGGCGGcGgCGaUCGUggCGGCGg -3'
miRNA:   3'- -CGGC-AUCGCCuUgGUaAGCA--GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 23629 0.71 0.823257
Target:  5'- cGCCGUggccugccugGGCGGcaugGACCGUcgUCGUUGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCC----UUGGUA--AGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 36515 0.68 0.944536
Target:  5'- cGUCGgacuGCGGucacccGCCggUCGUCGGCa- -3'
miRNA:   3'- -CGGCau--CGCCu-----UGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 36790 0.66 0.974925
Target:  5'- gGCCacgcgcuGCGGAGCCGcUCGcggaCGGCGg -3'
miRNA:   3'- -CGGcau----CGCCUUGGUaAGCa---GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 36902 0.66 0.977327
Target:  5'- aGCCGUGGUGGAagagGCUucgUGUCGGa-- -3'
miRNA:   3'- -CGGCAUCGCCU----UGGuaaGCAGCCgca -5'
14642 5' -54.9 NC_003521.1 + 36964 0.68 0.935446
Target:  5'- cGUCGcAGCGGAGCgGgugcUCGgCGGCGa -3'
miRNA:   3'- -CGGCaUCGCCUUGgUa---AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 37009 0.68 0.940102
Target:  5'- cGUCGcGGCGGAgucaggACCGacaggaguccUCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCU------UGGUa---------AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 37203 0.69 0.920135
Target:  5'- aGCCGUAaccCGGGACUGUUCuucagCGGCGa -3'
miRNA:   3'- -CGGCAUc--GCCUUGGUAAGca---GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 38013 0.67 0.956524
Target:  5'- cGCUGaGGCGGGuUUGUUCGaCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCUuGGUAAGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 39301 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 39865 0.66 0.977327
Target:  5'- uGCaCGUGGUGGggUUGUgcaCGUUGGgGUg -3'
miRNA:   3'- -CG-GCAUCGCCuuGGUAa--GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 45685 0.68 0.940102
Target:  5'- gGCCGgacaccgAGCGGAcACCGUacCG-CGGCGa -3'
miRNA:   3'- -CGGCa------UCGCCU-UGGUAa-GCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 50450 0.69 0.908809
Target:  5'- aGCgGUGGaCGGAGCCGaaagccgcgUGUCGGUGa -3'
miRNA:   3'- -CGgCAUC-GCCUUGGUaa-------GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 52670 0.69 0.920135
Target:  5'- aGCgGcagcAGCGGcACCGgcagCGUCGGCGg -3'
miRNA:   3'- -CGgCa---UCGCCuUGGUaa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 70337 0.67 0.969574
Target:  5'- cGCCGUccAGCaGGGCguUgagcUUGUCGGCGg -3'
miRNA:   3'- -CGGCA--UCGcCUUGguA----AGCAGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.