miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 240582 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 240092 0.66 0.977327
Target:  5'- uGCaCGUGGUGGggUUGUgcaCGUUGGgGUg -3'
miRNA:   3'- -CG-GCAUCGCCuuGGUAa--GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 239528 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 237973 0.73 0.724298
Target:  5'- cGUCGaGGUcGAACCAggcgUCGUCGGCGa -3'
miRNA:   3'- -CGGCaUCGcCUUGGUa---AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 234734 0.69 0.925463
Target:  5'- aGCCGUGGCGGAacgccgccgcACCGgcCGUC-GCa- -3'
miRNA:   3'- -CGGCAUCGCCU----------UGGUaaGCAGcCGca -5'
14642 5' -54.9 NC_003521.1 + 233179 0.81 0.362617
Target:  5'- cGCCGUGGCGGccGCCGUUacCGUCGGuCGUu -3'
miRNA:   3'- -CGGCAUCGCCu-UGGUAA--GCAGCC-GCA- -5'
14642 5' -54.9 NC_003521.1 + 228242 0.67 0.972343
Target:  5'- gGUCGUGGUGGGugccGCCGUggUgGUCGGUu- -3'
miRNA:   3'- -CGGCAUCGCCU----UGGUA--AgCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 226288 0.67 0.966613
Target:  5'- gGCCGUGGCGuacGAGCCc-UCGggcgUGGUGUc -3'
miRNA:   3'- -CGGCAUCGC---CUUGGuaAGCa---GCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 225663 0.69 0.908809
Target:  5'- uGUCGUAGCGGugcagcACCAaggCGUUGGgGUc -3'
miRNA:   3'- -CGGCAUCGCCu-----UGGUaa-GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 224863 0.67 0.966613
Target:  5'- gGCCGUAGCGc-GCCAgcUCGUCcaGGUGc -3'
miRNA:   3'- -CGGCAUCGCcuUGGUa-AGCAG--CCGCa -5'
14642 5' -54.9 NC_003521.1 + 223739 0.7 0.875972
Target:  5'- uCCgGUGGCGGGaacgugggucgccGCCAgcgguaUCGUCGGCGc -3'
miRNA:   3'- cGG-CAUCGCCU-------------UGGUa-----AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 221731 0.68 0.935446
Target:  5'- gGCCGUcugggugaucaAGCGGAACgAcagCGUCaGCGUc -3'
miRNA:   3'- -CGGCA-----------UCGCCUUGgUaa-GCAGcCGCA- -5'
14642 5' -54.9 NC_003521.1 + 219741 0.68 0.944536
Target:  5'- cGCCGUcGCGGGACCA---GUCuGUGUc -3'
miRNA:   3'- -CGGCAuCGCCUUGGUaagCAGcCGCA- -5'
14642 5' -54.9 NC_003521.1 + 212073 0.68 0.946247
Target:  5'- gGCgGUGGCGcGGCCcgcgcgcgucuggUUGUCGGCGUg -3'
miRNA:   3'- -CGgCAUCGCcUUGGua-----------AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 210748 0.69 0.917941
Target:  5'- gGCCGUGGCGGGGCaCAUgaacaguuccccgCGUgGGUu- -3'
miRNA:   3'- -CGGCAUCGCCUUG-GUAa------------GCAgCCGca -5'
14642 5' -54.9 NC_003521.1 + 200407 0.68 0.944536
Target:  5'- gGCCGUGGUGGAcagcACCgaGUUCGaCaGCGa -3'
miRNA:   3'- -CGGCAUCGCCU----UGG--UAAGCaGcCGCa -5'
14642 5' -54.9 NC_003521.1 + 200261 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 198271 0.7 0.896598
Target:  5'- aGCCGUcccAGCGGcACCAgcagUCaUCGGgGUg -3'
miRNA:   3'- -CGGCA---UCGCCuUGGUa---AGcAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 195195 0.77 0.547603
Target:  5'- aGCCGgcGGCGGuGGCCGUcugCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCC-UUGGUAa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 193447 0.67 0.969574
Target:  5'- cGCCc---UGGGACCcUUCGUCGGCa- -3'
miRNA:   3'- -CGGcaucGCCUUGGuAAGCAGCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.