miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 192262 0.76 0.567046
Target:  5'- aGCCGUcaccuucaccAGCGGcgucuccacGCCGUUCGUCGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCCu--------UGGUAAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 192181 0.72 0.78901
Target:  5'- cGCCGgucGCGGccacACCGguuuggguUUCGUCGGCGg -3'
miRNA:   3'- -CGGCau-CGCCu---UGGU--------AAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 188064 0.66 0.983517
Target:  5'- uGCCGcGGUaGAGCCGcUCGUCucccgauccccuGGCGUg -3'
miRNA:   3'- -CGGCaUCGcCUUGGUaAGCAG------------CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 187197 0.68 0.940102
Target:  5'- cGCCugcauCGGGGaCAUUCGUCGGCGg -3'
miRNA:   3'- -CGGcauc-GCCUUgGUAAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 180655 0.75 0.655932
Target:  5'- uCUGUAGCGGcuCCAggCGUUGGCGc -3'
miRNA:   3'- cGGCAUCGCCuuGGUaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 179068 0.71 0.847257
Target:  5'- -gCGUcAGCGGGucgcguGCCcgUCGUCGGUGa -3'
miRNA:   3'- cgGCA-UCGCCU------UGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 178909 0.68 0.952744
Target:  5'- aUCGUAGCGGucacCCAUcaCGUCGGgGa -3'
miRNA:   3'- cGGCAUCGCCuu--GGUAa-GCAGCCgCa -5'
14642 5' -54.9 NC_003521.1 + 178621 0.67 0.972343
Target:  5'- uCCGU-GCGGAuuuGCaCGUugcgUCGUUGGCGg -3'
miRNA:   3'- cGGCAuCGCCU---UG-GUA----AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 172470 0.67 0.966613
Target:  5'- gGCCGgcAGCGGuGCgc--CGUCGGCGg -3'
miRNA:   3'- -CGGCa-UCGCCuUGguaaGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 172302 0.68 0.935446
Target:  5'- cGCCGUccggugucGGUGGcGCCAggccggUCG-CGGCGg -3'
miRNA:   3'- -CGGCA--------UCGCCuUGGUa-----AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 171655 0.71 0.83143
Target:  5'- cGCCGcGGCGGGcguCgGgagCGUCGGCGg -3'
miRNA:   3'- -CGGCaUCGCCUu--GgUaa-GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 170296 0.68 0.952744
Target:  5'- gGCCGgccgAGCGcGAGgCGgucaCGUCGGUGUu -3'
miRNA:   3'- -CGGCa---UCGC-CUUgGUaa--GCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 169570 0.67 0.963455
Target:  5'- cGCCGauguUGGCGGGAUCGUggCGUCuGUGc -3'
miRNA:   3'- -CGGC----AUCGCCUUGGUAa-GCAGcCGCa -5'
14642 5' -54.9 NC_003521.1 + 167726 0.66 0.981616
Target:  5'- aGCgGUAGUGGuaGACCGggUCGUacCGGuCGUg -3'
miRNA:   3'- -CGgCAUCGCC--UUGGUa-AGCA--GCC-GCA- -5'
14642 5' -54.9 NC_003521.1 + 164682 0.67 0.956524
Target:  5'- cGCCGUGuGCGcgucgaGGACCuggugcugUCGUCGGUGc -3'
miRNA:   3'- -CGGCAU-CGC------CUUGGua------AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 164121 0.67 0.966613
Target:  5'- cGCCGccGGUGccaccgcuacacGGACCcgUCGUCGGCu- -3'
miRNA:   3'- -CGGCa-UCGC------------CUUGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 163408 0.69 0.902813
Target:  5'- gGCCGUGGC----CCcgUCGUCGGCu- -3'
miRNA:   3'- -CGGCAUCGccuuGGuaAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 160328 0.69 0.930567
Target:  5'- aGCCGUgGGCGGcgcgguGGCCuccgUCGUCgagGGCGUc -3'
miRNA:   3'- -CGGCA-UCGCC------UUGGua--AGCAG---CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 149697 0.69 0.908809
Target:  5'- aGCUGaGGUGGAGCCcUgugagcucUCGcUCGGCGUg -3'
miRNA:   3'- -CGGCaUCGCCUUGGuA--------AGC-AGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 139760 0.7 0.876669
Target:  5'- uGCCGacGGCaGGAuCCGgcCGUCGGCGg -3'
miRNA:   3'- -CGGCa-UCG-CCUuGGUaaGCAGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.