miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 77220 0.67 0.969574
Target:  5'- uGCCGUucuccAGCGuGAcGCUGUagaCGUCGGCGg -3'
miRNA:   3'- -CGGCA-----UCGC-CU-UGGUAa--GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 77593 0.68 0.940102
Target:  5'- cGCCGUGGCcGAACCca-CGUCaccgGGCGc -3'
miRNA:   3'- -CGGCAUCGcCUUGGuaaGCAG----CCGCa -5'
14642 5' -54.9 NC_003521.1 + 77707 0.7 0.869611
Target:  5'- aGCCGUGGCGGcg----UUGUUGGCGa -3'
miRNA:   3'- -CGGCAUCGCCuugguaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 82031 0.67 0.955413
Target:  5'- -aCGUAGCGGGuGCUAUggguguuggaguagUCGUCGGgGa -3'
miRNA:   3'- cgGCAUCGCCU-UGGUA--------------AGCAGCCgCa -5'
14642 5' -54.9 NC_003521.1 + 89626 0.67 0.960093
Target:  5'- aCCGUGGUGGuGACCGU-CG-CGGCc- -3'
miRNA:   3'- cGGCAUCGCC-UUGGUAaGCaGCCGca -5'
14642 5' -54.9 NC_003521.1 + 89842 0.68 0.935446
Target:  5'- cGCCGUAGCcGAugucggccGCCAgcgccgCGUCGcGCGa -3'
miRNA:   3'- -CGGCAUCGcCU--------UGGUaa----GCAGC-CGCa -5'
14642 5' -54.9 NC_003521.1 + 91034 0.73 0.743285
Target:  5'- gGCCGUucGCGGAacGCCGUggCGUUgaGGCGUa -3'
miRNA:   3'- -CGGCAu-CGCCU--UGGUAa-GCAG--CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 91560 0.69 0.930567
Target:  5'- cGCCGacGCGGAacgacaugGCCAcgUCGUaGGCGUa -3'
miRNA:   3'- -CGGCauCGCCU--------UGGUa-AGCAgCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 91922 0.67 0.963455
Target:  5'- uGCCGcGGCGGcgcuCCucggCGUCGGCc- -3'
miRNA:   3'- -CGGCaUCGCCuu--GGuaa-GCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 92108 0.66 0.983517
Target:  5'- uGCCccgGGuCGGAACCcccgggugcgGUUCGggCGGCGg -3'
miRNA:   3'- -CGGca-UC-GCCUUGG----------UAAGCa-GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 94940 0.73 0.752646
Target:  5'- cGCCGccGGCGGc-CUcgUCGUCGGCGc -3'
miRNA:   3'- -CGGCa-UCGCCuuGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 95791 0.66 0.974925
Target:  5'- uGCCGcu-CGGccacgcGACCAgcgCGUCGGCGa -3'
miRNA:   3'- -CGGCaucGCC------UUGGUaa-GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 99546 0.69 0.925463
Target:  5'- uGCCGcAGCGGuagguGCCcauggcgUUGUUGGCGUc -3'
miRNA:   3'- -CGGCaUCGCCu----UGGua-----AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 103356 0.66 0.981616
Target:  5'- cGCCGgcGCccuuCCAcUCGUCGGUGc -3'
miRNA:   3'- -CGGCauCGccuuGGUaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 103636 0.66 0.981616
Target:  5'- cGCCGacuccAGCGGGGgCAgcUCGgCGGCGg -3'
miRNA:   3'- -CGGCa----UCGCCUUgGUa-AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 105943 0.7 0.869611
Target:  5'- gGCCGgcGCGGAugaugACCGUgUGUCGG-GUg -3'
miRNA:   3'- -CGGCauCGCCU-----UGGUAaGCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 108004 0.67 0.969574
Target:  5'- aGCuCGgaGGCGaaAACCAcgccUUCGUCGGCGUc -3'
miRNA:   3'- -CG-GCa-UCGCc-UUGGU----AAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 108970 0.68 0.942789
Target:  5'- gGCCGUGGCcgccuuGAACCAgcccacguugacgUUGUUGGUGUg -3'
miRNA:   3'- -CGGCAUCGc-----CUUGGUa------------AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 111244 0.67 0.960093
Target:  5'- gGCCGgcGCGGcgcggcggagcAGCCA-UCGUCGGg-- -3'
miRNA:   3'- -CGGCauCGCC-----------UUGGUaAGCAGCCgca -5'
14642 5' -54.9 NC_003521.1 + 113979 0.69 0.914583
Target:  5'- aGCUGUuccuGGCGGuGCaGUUCGUgGGCGa -3'
miRNA:   3'- -CGGCA----UCGCCuUGgUAAGCAgCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.