miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 99546 0.69 0.925463
Target:  5'- uGCCGcAGCGGuagguGCCcauggcgUUGUUGGCGUc -3'
miRNA:   3'- -CGGCaUCGCCu----UGGua-----AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 239528 1.09 0.006524
Target:  5'- cGCCGUAGCGGAACCAUUCGUCGGCGUc -3'
miRNA:   3'- -CGGCAUCGCCUUGGUAAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 192262 0.76 0.567046
Target:  5'- aGCCGUcaccuucaccAGCGGcgucuccacGCCGUUCGUCGGCa- -3'
miRNA:   3'- -CGGCA----------UCGCCu--------UGGUAAGCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 116466 0.74 0.69528
Target:  5'- gGCCGUGGUGGGACaCGUgg--CGGCGa -3'
miRNA:   3'- -CGGCAUCGCCUUG-GUAagcaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 237973 0.73 0.724298
Target:  5'- cGUCGaGGUcGAACCAggcgUCGUCGGCGa -3'
miRNA:   3'- -CGGCaUCGcCUUGGUa---AGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 127298 0.72 0.78901
Target:  5'- cGCCGUGGUGGcgcGCCucgaUGUUGGCGUu -3'
miRNA:   3'- -CGGCAUCGCCu--UGGuaa-GCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 192181 0.72 0.78901
Target:  5'- cGCCGgucGCGGccacACCGguuuggguUUCGUCGGCGg -3'
miRNA:   3'- -CGGCau-CGCCu---UGGU--------AAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 135008 0.71 0.839432
Target:  5'- gGCCGUGGCGucGCCcUUC-UCGGUGa -3'
miRNA:   3'- -CGGCAUCGCcuUGGuAAGcAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 179068 0.71 0.847257
Target:  5'- -gCGUcAGCGGGucgcguGCCcgUCGUCGGUGa -3'
miRNA:   3'- cgGCA-UCGCCU------UGGuaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 77707 0.7 0.869611
Target:  5'- aGCCGUGGCGGcg----UUGUUGGCGa -3'
miRNA:   3'- -CGGCAUCGCCuugguaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 105943 0.7 0.869611
Target:  5'- gGCCGgcGCGGAugaugACCGUgUGUCGG-GUg -3'
miRNA:   3'- -CGGCauCGCCU-----UGGUAaGCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 116714 0.7 0.890167
Target:  5'- cGCCGUccacuuccacGGCGGucCCGga-GUCGGCGc -3'
miRNA:   3'- -CGGCA----------UCGCCuuGGUaagCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 198271 0.7 0.896598
Target:  5'- aGCCGUcccAGCGGcACCAgcagUCaUCGGgGUg -3'
miRNA:   3'- -CGGCA---UCGCCuUGGUa---AGcAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 50450 0.69 0.908809
Target:  5'- aGCgGUGGaCGGAGCCGaaagccgcgUGUCGGUGa -3'
miRNA:   3'- -CGgCAUC-GCCUUGGUaa-------GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 225663 0.69 0.908809
Target:  5'- uGUCGUAGCGGugcagcACCAaggCGUUGGgGUc -3'
miRNA:   3'- -CGGCAUCGCCu-----UGGUaa-GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 149697 0.69 0.908809
Target:  5'- aGCUGaGGUGGAGCCcUgugagcucUCGcUCGGCGUg -3'
miRNA:   3'- -CGGCaUCGCCUUGGuA--------AGC-AGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 127226 0.69 0.916831
Target:  5'- cGCUGgcGCGGugguccuccacgaagAGCgGcUCGUCGGCGUc -3'
miRNA:   3'- -CGGCauCGCC---------------UUGgUaAGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 210748 0.69 0.917941
Target:  5'- gGCCGUGGCGGGGCaCAUgaacaguuccccgCGUgGGUu- -3'
miRNA:   3'- -CGGCAUCGCCUUG-GUAa------------GCAgCCGca -5'
14642 5' -54.9 NC_003521.1 + 37203 0.69 0.920135
Target:  5'- aGCCGUAaccCGGGACUGUUCuucagCGGCGa -3'
miRNA:   3'- -CGGCAUc--GCCUUGGUAAGca---GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 126957 0.69 0.925463
Target:  5'- uGCCGccGCGGAACCcgcgccgUCGUCGcCGg -3'
miRNA:   3'- -CGGCauCGCCUUGGua-----AGCAGCcGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.