miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14643 5' -49.7 NC_003521.1 + 105108 0.65 0.999542
Target:  5'- gGcGAGCGCGaGGUUUUgAgccuccuGAGGCAGAc -3'
miRNA:   3'- gC-CUCGUGCaUCAAAAgU-------CUCCGUUU- -5'
14643 5' -49.7 NC_003521.1 + 75555 0.66 0.999443
Target:  5'- aCGaGAGCGagacCGUGGUgugcgugUUCuGAGGCGAc -3'
miRNA:   3'- -GC-CUCGU----GCAUCAa------AAGuCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 78202 0.66 0.999443
Target:  5'- gCGGAGCgggcGCGgcGcucgUCGGAGGCu-- -3'
miRNA:   3'- -GCCUCG----UGCauCaaa-AGUCUCCGuuu -5'
14643 5' -49.7 NC_003521.1 + 166909 0.66 0.999312
Target:  5'- aCGG-GCACG-GGg---CAGAGGUAGAc -3'
miRNA:   3'- -GCCuCGUGCaUCaaaaGUCUCCGUUU- -5'
14643 5' -49.7 NC_003521.1 + 186922 0.66 0.999312
Target:  5'- gGGGGCGCc-GGUgg-CGGGGGCGGc -3'
miRNA:   3'- gCCUCGUGcaUCAaaaGUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 46388 0.66 0.999312
Target:  5'- aGGGGCGCGgGGUg--CGuGGGGCGc- -3'
miRNA:   3'- gCCUCGUGCaUCAaaaGU-CUCCGUuu -5'
14643 5' -49.7 NC_003521.1 + 86986 0.66 0.998967
Target:  5'- uGGAGCGCGUccauccgUCAGAGcGUGGAa -3'
miRNA:   3'- gCCUCGUGCAucaaa--AGUCUC-CGUUU- -5'
14643 5' -49.7 NC_003521.1 + 74997 0.66 0.998967
Target:  5'- gCGGGuGCGCGUAGUgaUCGuGGGCc-- -3'
miRNA:   3'- -GCCU-CGUGCAUCAaaAGUcUCCGuuu -5'
14643 5' -49.7 NC_003521.1 + 53773 0.66 0.998967
Target:  5'- aCGGAGuCGCGUcuccg-CGGAGGCGu- -3'
miRNA:   3'- -GCCUC-GUGCAucaaaaGUCUCCGUuu -5'
14643 5' -49.7 NC_003521.1 + 170185 0.67 0.998746
Target:  5'- uCGGAGCG-GUGGUgccggUGGAGGUAGu -3'
miRNA:   3'- -GCCUCGUgCAUCAaaa--GUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 113583 0.67 0.998486
Target:  5'- uGGGGCugGgcc---UCGGGGGCAAc -3'
miRNA:   3'- gCCUCGugCaucaaaAGUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 6847 0.67 0.997827
Target:  5'- aGGAGguUGUAGUg---GGAGGCGu- -3'
miRNA:   3'- gCCUCguGCAUCAaaagUCUCCGUuu -5'
14643 5' -49.7 NC_003521.1 + 155238 0.68 0.9964
Target:  5'- uGGAGUcCGUGGUgguggUgGGGGGCGGc -3'
miRNA:   3'- gCCUCGuGCAUCAaa---AgUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 118684 0.68 0.995781
Target:  5'- uCGGGGCACGUGcugaaagccGUgUUCAGccgcGGCGAGa -3'
miRNA:   3'- -GCCUCGUGCAU---------CAaAAGUCu---CCGUUU- -5'
14643 5' -49.7 NC_003521.1 + 209588 0.68 0.995781
Target:  5'- gGGGcGCACGUAG----CGGAGGUAAAc -3'
miRNA:   3'- gCCU-CGUGCAUCaaaaGUCUCCGUUU- -5'
14643 5' -49.7 NC_003521.1 + 494 0.68 0.99428
Target:  5'- cCGaGAGaaCACGcGGUUUUCAGGGGUGAc -3'
miRNA:   3'- -GC-CUC--GUGCaUCAAAAGUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 200721 0.68 0.99428
Target:  5'- cCGaGAGaaCACGcGGUUUUCAGGGGUGAc -3'
miRNA:   3'- -GC-CUC--GUGCaUCAAAAGUCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 180398 0.69 0.993382
Target:  5'- uGGGGC-UGUAGacg-UAGAGGCAGAg -3'
miRNA:   3'- gCCUCGuGCAUCaaaaGUCUCCGUUU- -5'
14643 5' -49.7 NC_003521.1 + 101344 0.69 0.992375
Target:  5'- gCGGuGUACGUAGUU----GAGGCAGc -3'
miRNA:   3'- -GCCuCGUGCAUCAAaaguCUCCGUUu -5'
14643 5' -49.7 NC_003521.1 + 237737 0.69 0.990388
Target:  5'- gGGGGCcaugugagguaccACGUAGUUcccgggaucggagaaUUCGGGGGCGGu -3'
miRNA:   3'- gCCUCG-------------UGCAUCAA---------------AAGUCUCCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.