miRNA display CGI


Results 81 - 100 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 101140 0.67 0.615987
Target:  5'- gGGCAcGCGGaaagCGC-GGCGCgGUCUgCGu -3'
miRNA:   3'- -CCGU-CGCCa---GCGuCCGCGgCGGAgGC- -5'
14644 5' -64.3 NC_003521.1 + 83769 0.67 0.615987
Target:  5'- gGGUGGCGG-CGCccccCGCCGCgCUCCu -3'
miRNA:   3'- -CCGUCGCCaGCGucc-GCGGCG-GAGGc -5'
14644 5' -64.3 NC_003521.1 + 130754 0.67 0.615987
Target:  5'- -uCGGCGGgCGCGaGCGCCGCg-CCGg -3'
miRNA:   3'- ccGUCGCCaGCGUcCGCGGCGgaGGC- -5'
14644 5' -64.3 NC_003521.1 + 118283 0.67 0.615987
Target:  5'- aGCGGCGGUagcaGCAGcacuaccacCGCCGCCggCCu -3'
miRNA:   3'- cCGUCGCCAg---CGUCc--------GCGGCGGa-GGc -5'
14644 5' -64.3 NC_003521.1 + 53653 0.67 0.615987
Target:  5'- uGGCcucuGGCGGUCaucaGGGCuacguucugucuGUCGCCUCCa -3'
miRNA:   3'- -CCG----UCGCCAGcg--UCCG------------CGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 195700 0.67 0.615051
Target:  5'- aGCAGCGccCGCAGcGUGUcguaaaaCGCCUCCa -3'
miRNA:   3'- cCGUCGCcaGCGUC-CGCG-------GCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 92029 0.67 0.606632
Target:  5'- cGGCGGCGGUgGgucCGGGgGUCcccgggguGCCUCCc -3'
miRNA:   3'- -CCGUCGCCAgC---GUCCgCGG--------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 130004 0.67 0.606632
Target:  5'- cGGCGGCGGcgCGCAacGGCcGCUgGCUUUCa -3'
miRNA:   3'- -CCGUCGCCa-GCGU--CCG-CGG-CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 66786 0.67 0.606632
Target:  5'- cGCAGCccacgUGCGGGCcaccGCCGUCUCCu -3'
miRNA:   3'- cCGUCGcca--GCGUCCG----CGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 74585 0.67 0.606632
Target:  5'- aGCGGCGG-CGC-GGCGucCCGCggCCGg -3'
miRNA:   3'- cCGUCGCCaGCGuCCGC--GGCGgaGGC- -5'
14644 5' -64.3 NC_003521.1 + 58419 0.67 0.606632
Target:  5'- uGCGGCGGUugacgaagcCGCA-GCGCUGCCgggcgaacuuUCCGc -3'
miRNA:   3'- cCGUCGCCA---------GCGUcCGCGGCGG----------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 43842 0.67 0.606632
Target:  5'- cGGCcGCGGgccCGUcacAGGCGCC-CCggCCGg -3'
miRNA:   3'- -CCGuCGCCa--GCG---UCCGCGGcGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 30917 0.67 0.606632
Target:  5'- aGGCgagAGCGGUCcugGGGCaGUCGCCgugCCGu -3'
miRNA:   3'- -CCG---UCGCCAGcg-UCCG-CGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 5655 0.67 0.606632
Target:  5'- uGGCGGCGGaggguggggggUCGagacaCGGGCGCC-CgUCCGc -3'
miRNA:   3'- -CCGUCGCC-----------AGC-----GUCCGCGGcGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 193309 0.67 0.597292
Target:  5'- cGCGGgGGUgGUGGGCacggugggggugGUCGCCUUCGu -3'
miRNA:   3'- cCGUCgCCAgCGUCCG------------CGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 53520 0.67 0.597292
Target:  5'- cGCAGCGGcCGauGGUGCUGUccgCUCCGg -3'
miRNA:   3'- cCGUCGCCaGCguCCGCGGCG---GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 216616 0.67 0.597292
Target:  5'- aGCAGCaGUCgacgguagGCGGGCGC-GCCgacgCCGg -3'
miRNA:   3'- cCGUCGcCAG--------CGUCCGCGgCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 126567 0.67 0.597292
Target:  5'- aGGCcGUGGgcaGCGGGaaGCCGCCgucgugCCGg -3'
miRNA:   3'- -CCGuCGCCag-CGUCCg-CGGCGGa-----GGC- -5'
14644 5' -64.3 NC_003521.1 + 195854 0.67 0.597292
Target:  5'- cGGCAGgguuCGGggaUCGCGGuGuCGCCGCCcuUCCu -3'
miRNA:   3'- -CCGUC----GCC---AGCGUC-C-GCGGCGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 113845 0.67 0.597292
Target:  5'- cGGCAGCGGg-GCGgccggcgacgacGGCGCgGgUUCCGc -3'
miRNA:   3'- -CCGUCGCCagCGU------------CCGCGgCgGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.