miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 6374 0.66 0.644093
Target:  5'- cGGUcGgGGUCGCggagGGGCGCCGCagCUa -3'
miRNA:   3'- -CCGuCgCCAGCG----UCCGCGGCGgaGGc -5'
14644 5' -64.3 NC_003521.1 + 142239 0.66 0.644093
Target:  5'- cGCuGCGcUCGCGGGC-CCGCUccUCCu -3'
miRNA:   3'- cCGuCGCcAGCGUCCGcGGCGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 218631 0.66 0.644093
Target:  5'- cGCGGCGGUaagcggccacgGCcGGCGgCGCCUCg- -3'
miRNA:   3'- cCGUCGCCAg----------CGuCCGCgGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 87076 0.66 0.644093
Target:  5'- aGGCGGCGG-CGUAGGgGuuGaggUCCa -3'
miRNA:   3'- -CCGUCGCCaGCGUCCgCggCgg-AGGc -5'
14644 5' -64.3 NC_003521.1 + 63147 0.66 0.643156
Target:  5'- aGCAGCuG-CGCGGGCugacgaucgacgcGCCGCC-CCa -3'
miRNA:   3'- cCGUCGcCaGCGUCCG-------------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 176925 0.67 0.634724
Target:  5'- gGGCGGgGGUCGUGGG-GCgGUCagCCa -3'
miRNA:   3'- -CCGUCgCCAGCGUCCgCGgCGGa-GGc -5'
14644 5' -64.3 NC_003521.1 + 123177 0.67 0.634724
Target:  5'- uGGCGGCGG-CgGCGGGgGaCCGUaggCCGc -3'
miRNA:   3'- -CCGUCGCCaG-CGUCCgC-GGCGga-GGC- -5'
14644 5' -64.3 NC_003521.1 + 212072 0.67 0.634724
Target:  5'- gGGCGGUGG-CGCGGccCGCgCGCgUCUGg -3'
miRNA:   3'- -CCGUCGCCaGCGUCc-GCG-GCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 112234 0.67 0.634724
Target:  5'- aGCAGUgcgaGGUCGUcgAGGUacuGCCGCCgUCCc -3'
miRNA:   3'- cCGUCG----CCAGCG--UCCG---CGGCGG-AGGc -5'
14644 5' -64.3 NC_003521.1 + 145869 0.67 0.634724
Target:  5'- cGGCGGCGG--GC-GGCGCCgacgacgagGCCgCCGg -3'
miRNA:   3'- -CCGUCGCCagCGuCCGCGG---------CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 223363 0.67 0.633787
Target:  5'- cGGCGGCcuuGGUCaGCAGcgacaucGCGgCGCC-CCGa -3'
miRNA:   3'- -CCGUCG---CCAG-CGUC-------CGCgGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 54502 0.67 0.633787
Target:  5'- cGGCGGCccggcguggaccaGGaUCuGCAcGGCGCCGCUggggcCCGg -3'
miRNA:   3'- -CCGUCG-------------CC-AG-CGU-CCGCGGCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 226884 0.67 0.629101
Target:  5'- gGGCAGCuG-CGgGGGCaccacggcggccagcGCgGCCUCCGc -3'
miRNA:   3'- -CCGUCGcCaGCgUCCG---------------CGgCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 160785 0.67 0.625354
Target:  5'- cGGCGGCa--CGCGGGCGCgGgUCUUCGu -3'
miRNA:   3'- -CCGUCGccaGCGUCCGCGgC-GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 190993 0.67 0.625354
Target:  5'- cGGCAGCaGG-CGCAGGUggacgugggcaGCCucauccagGCCUCUa -3'
miRNA:   3'- -CCGUCG-CCaGCGUCCG-----------CGG--------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 135809 0.67 0.625354
Target:  5'- aGCGGCGGagGgAGGCGCgGCgacgaacgCUCCc -3'
miRNA:   3'- cCGUCGCCagCgUCCGCGgCG--------GAGGc -5'
14644 5' -64.3 NC_003521.1 + 143172 0.67 0.625354
Target:  5'- cGUGGgGGUCGgAcccGGCGCCGCCg-CGa -3'
miRNA:   3'- cCGUCgCCAGCgU---CCGCGGCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 207038 0.67 0.625354
Target:  5'- aGCAGuCGGUgGCuGG-GCCGCaggCCGg -3'
miRNA:   3'- cCGUC-GCCAgCGuCCgCGGCGga-GGC- -5'
14644 5' -64.3 NC_003521.1 + 222623 0.67 0.619733
Target:  5'- cGCGGCcgacaugugaucgaaGGgccgGCAGGCGCgcagCGCCUCCa -3'
miRNA:   3'- cCGUCG---------------CCag--CGUCCGCG----GCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 101140 0.67 0.615987
Target:  5'- gGGCAcGCGGaaagCGC-GGCGCgGUCUgCGu -3'
miRNA:   3'- -CCGU-CGCCa---GCGuCCGCGgCGGAgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.