Results 41 - 60 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 211457 | 0.66 | 0.653453 |
Target: 5'- gGGUAccGCGGcCGCGGGU-UCGCaCUCCGu -3' miRNA: 3'- -CCGU--CGCCaGCGUCCGcGGCG-GAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 52792 | 0.66 | 0.653453 |
Target: 5'- aGGCGGCGGU-GC-GGCuccaccugGaCCGCCUUCa -3' miRNA: 3'- -CCGUCGCCAgCGuCCG--------C-GGCGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 38816 | 0.66 | 0.653453 |
Target: 5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3' miRNA: 3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 162876 | 0.66 | 0.653453 |
Target: 5'- cGCAGgGGcgcgCGCAGGUggGCCGCUaCUGc -3' miRNA: 3'- cCGUCgCCa---GCGUCCG--CGGCGGaGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 37415 | 0.66 | 0.653453 |
Target: 5'- gGGCcugaccguGUGG-CGC-GGCGCCgaGCCUCUGa -3' miRNA: 3'- -CCGu-------CGCCaGCGuCCGCGG--CGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 18909 | 0.66 | 0.653453 |
Target: 5'- cGGCAGCcccgaagGguGGCGCCGCgCgCCGg -3' miRNA: 3'- -CCGUCGccag---CguCCGCGGCG-GaGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 146900 | 0.66 | 0.653453 |
Target: 5'- gGGCAGCGGU---AGuCGCCGCUUgCCGc -3' miRNA: 3'- -CCGUCGCCAgcgUCcGCGGCGGA-GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 101818 | 0.66 | 0.653453 |
Target: 5'- aGGgGGCGGUCGCGGuaG--GCCUCgGg -3' miRNA: 3'- -CCgUCGCCAGCGUCcgCggCGGAGgC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 218089 | 0.66 | 0.653453 |
Target: 5'- aGGCGGCGG-CGCcggugacgaugaGGGCGUagaGCCcgCUGu -3' miRNA: 3'- -CCGUCGCCaGCG------------UCCGCGg--CGGa-GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 239043 | 0.66 | 0.653453 |
Target: 5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3' miRNA: 3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 75982 | 0.66 | 0.653453 |
Target: 5'- aGG-AGCGGcccUCGcCGGGCGCCGUCagCa -3' miRNA: 3'- -CCgUCGCC---AGC-GUCCGCGGCGGagGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 7990 | 0.66 | 0.647838 |
Target: 5'- cGGCGGCGGgggagguaccgggGCA-GCGCCGUagCUCCa -3' miRNA: 3'- -CCGUCGCCag-----------CGUcCGCGGCG--GAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 196414 | 0.66 | 0.646902 |
Target: 5'- gGGCAGCGGcacagacagucgcugUCGCccGGGUcgGCCGgcugccgcgcgaaCCUCCGc -3' miRNA: 3'- -CCGUCGCC---------------AGCG--UCCG--CGGC-------------GGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 69272 | 0.66 | 0.645029 |
Target: 5'- uGGCaAGCGGUcuguuuaaccagcgCGCAgccccgacacagggcGGCGCCGuCCUCg- -3' miRNA: 3'- -CCG-UCGCCA--------------GCGU---------------CCGCGGC-GGAGgc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 226358 | 0.66 | 0.644093 |
Target: 5'- gGGUAGCGc-CGCGGGagcggcggcugaCGCCGCCgcagggCCGu -3' miRNA: 3'- -CCGUCGCcaGCGUCC------------GCGGCGGa-----GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 218631 | 0.66 | 0.644093 |
Target: 5'- cGCGGCGGUaagcggccacgGCcGGCGgCGCCUCg- -3' miRNA: 3'- cCGUCGCCAg----------CGuCCGCgGCGGAGgc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 197127 | 0.66 | 0.644093 |
Target: 5'- gGGUGGgGGUCGUuGuCGUCGUCUCCu -3' miRNA: 3'- -CCGUCgCCAGCGuCcGCGGCGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 34426 | 0.66 | 0.644093 |
Target: 5'- gGGCGucGCGGUgcgacuccaCGUAGGCGCUGCgggCCu -3' miRNA: 3'- -CCGU--CGCCA---------GCGUCCGCGGCGga-GGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 57004 | 0.66 | 0.644093 |
Target: 5'- uGGCcGCGGUCaCGGaCGCCGCCaCgCGg -3' miRNA: 3'- -CCGuCGCCAGcGUCcGCGGCGGaG-GC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 87076 | 0.66 | 0.644093 |
Target: 5'- aGGCGGCGG-CGUAGGgGuuGaggUCCa -3' miRNA: 3'- -CCGUCGCCaGCGUCCgCggCgg-AGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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