miRNA display CGI


Results 41 - 60 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 49578 0.73 0.292132
Target:  5'- cGC-GUGGgcCGC-GGCGCCGCCUCCu -3'
miRNA:   3'- cCGuCGCCa-GCGuCCGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 52687 0.66 0.690689
Target:  5'- cGGCAGC-GUCgGC-GGUGCCaGCCgcUCCa -3'
miRNA:   3'- -CCGUCGcCAG-CGuCCGCGG-CGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 52792 0.66 0.653453
Target:  5'- aGGCGGCGGU-GC-GGCuccaccugGaCCGCCUUCa -3'
miRNA:   3'- -CCGUCGCCAgCGuCCG--------C-GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 53520 0.67 0.597292
Target:  5'- cGCAGCGGcCGauGGUGCUGUccgCUCCGg -3'
miRNA:   3'- cCGUCGCCaGCguCCGCGGCG---GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 53653 0.67 0.615987
Target:  5'- uGGCcucuGGCGGUCaucaGGGCuacguucugucuGUCGCCUCCa -3'
miRNA:   3'- -CCG----UCGCCAGcg--UCCG------------CGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 54502 0.67 0.633787
Target:  5'- cGGCGGCccggcguggaccaGGaUCuGCAcGGCGCCGCUggggcCCGg -3'
miRNA:   3'- -CCGUCG-------------CC-AG-CGU-CCGCGGCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 55455 0.66 0.681424
Target:  5'- gGGCGGCGcgcuggaaGagGCAcuGCGCCGCCUugCCGu -3'
miRNA:   3'- -CCGUCGC--------CagCGUc-CGCGGCGGA--GGC- -5'
14644 5' -64.3 NC_003521.1 + 55753 0.69 0.514804
Target:  5'- gGGCGGCaG-CGaCAGGCGCgGCCggCGg -3'
miRNA:   3'- -CCGUCGcCaGC-GUCCGCGgCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 55918 0.72 0.323909
Target:  5'- cGGCGGCGGcaaCGgGGGUGCCagcgggguaugagGCCUCUGu -3'
miRNA:   3'- -CCGUCGCCa--GCgUCCGCGG-------------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 56701 0.66 0.687913
Target:  5'- aGGCAGCGGaugaCGCuGGUcgcgucgacgucgaGCCGCgUCaCGu -3'
miRNA:   3'- -CCGUCGCCa---GCGuCCG--------------CGGCGgAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 57004 0.66 0.644093
Target:  5'- uGGCcGCGGUCaCGGaCGCCGCCaCgCGg -3'
miRNA:   3'- -CCGuCGCCAGcGUCcGCGGCGGaG-GC- -5'
14644 5' -64.3 NC_003521.1 + 57162 0.66 0.690689
Target:  5'- cGCGGCaGGUCGuCGGcGUGCCGCagcaCGa -3'
miRNA:   3'- cCGUCG-CCAGC-GUC-CGCGGCGgag-GC- -5'
14644 5' -64.3 NC_003521.1 + 58419 0.67 0.606632
Target:  5'- uGCGGCGGUugacgaagcCGCA-GCGCUGCCgggcgaacuuUCCGc -3'
miRNA:   3'- cCGUCGCCA---------GCGUcCGCGGCGG----------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 58891 0.72 0.345308
Target:  5'- cGCGGCGaGUCGCA-GC-CCGUCUCCa -3'
miRNA:   3'- cCGUCGC-CAGCGUcCGcGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 59423 0.7 0.421014
Target:  5'- uGGCAcGCGacaGC-GGCGCCGCCgCCGg -3'
miRNA:   3'- -CCGU-CGCcagCGuCCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 60707 0.68 0.532801
Target:  5'- cGGgGGCGG-CGCGGGUcgcaccacgccGCUGcCCUCCc -3'
miRNA:   3'- -CCgUCGCCaGCGUCCG-----------CGGC-GGAGGc -5'
14644 5' -64.3 NC_003521.1 + 60748 0.79 0.128988
Target:  5'- cGGCGGCGGcagucgcCGCGGGagaaucccCGCCGCCUCCu -3'
miRNA:   3'- -CCGUCGCCa------GCGUCC--------GCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 63147 0.66 0.643156
Target:  5'- aGCAGCuG-CGCGGGCugacgaucgacgcGCCGCC-CCa -3'
miRNA:   3'- cCGUCGcCaGCGUCCG-------------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 63226 0.69 0.471833
Target:  5'- cGGCAGCGGaacggccggaaccgGC-GGCGCCGCCaCCu -3'
miRNA:   3'- -CCGUCGCCag------------CGuCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 66786 0.67 0.606632
Target:  5'- cGCAGCccacgUGCGGGCcaccGCCGUCUCCu -3'
miRNA:   3'- cCGUCGcca--GCGUCCG----CGGCGGAGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.