miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 30917 0.67 0.606632
Target:  5'- aGGCgagAGCGGUCcugGGGCaGUCGCCgugCCGu -3'
miRNA:   3'- -CCG---UCGCCAGcg-UCCG-CGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 31704 0.69 0.468404
Target:  5'- gGGCGGCGGcagcaugugCGCGugcugggacgccgcGGCcaCCGCCUCCGc -3'
miRNA:   3'- -CCGUCGCCa--------GCGU--------------CCGc-GGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 34426 0.66 0.644093
Target:  5'- gGGCGucGCGGUgcgacuccaCGUAGGCGCUGCgggCCu -3'
miRNA:   3'- -CCGU--CGCCA---------GCGUCCGCGGCGga-GGc -5'
14644 5' -64.3 NC_003521.1 + 34503 0.69 0.505898
Target:  5'- aGCAGCGaG-CGCAGGUaGCgGCCgcgggCCGa -3'
miRNA:   3'- cCGUCGC-CaGCGUCCG-CGgCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 34962 0.69 0.514804
Target:  5'- cGCAGaGGucggccagaUCGCGGGCGCagaagGUCUCCGg -3'
miRNA:   3'- cCGUCgCC---------AGCGUCCGCGg----CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 35477 0.66 0.690689
Target:  5'- uGCA-CGG-CGCAGcUGCCGCCgCCGa -3'
miRNA:   3'- cCGUcGCCaGCGUCcGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 36543 0.68 0.541885
Target:  5'- cGGCAuGcCGGUCauGUcGaGCGCCGUCUCCa -3'
miRNA:   3'- -CCGU-C-GCCAG--CGuC-CGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 37333 0.7 0.453976
Target:  5'- uGGgGGCGGUCGCggAGGaCGCaCGUaUCCGc -3'
miRNA:   3'- -CCgUCGCCAGCG--UCC-GCG-GCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 37415 0.66 0.653453
Target:  5'- gGGCcugaccguGUGG-CGC-GGCGCCgaGCCUCUGa -3'
miRNA:   3'- -CCGu-------CGCCaGCGuCCGCGG--CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 38217 0.68 0.532801
Target:  5'- gGGCAGgaGG-CGCAGG-GCgGCCUCgGc -3'
miRNA:   3'- -CCGUCg-CCaGCGUCCgCGgCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 38477 0.66 0.681424
Target:  5'- uGGCGGUGGgCGCcGGCGUUcuuacucgaGCC-CCGa -3'
miRNA:   3'- -CCGUCGCCaGCGuCCGCGG---------CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 38816 0.66 0.653453
Target:  5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3'
miRNA:   3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 39231 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 39464 0.72 0.359643
Target:  5'- cGGCAGCGGuUCGUGucccGuCGCCGCCUCg- -3'
miRNA:   3'- -CCGUCGCC-AGCGUc---C-GCGGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 39811 0.72 0.359643
Target:  5'- gGGCgccgGGCGGUccucCGCcgauGGCGCCugcuugGCCUCCGg -3'
miRNA:   3'- -CCG----UCGCCA----GCGu---CCGCGG------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 40233 1.1 0.000825
Target:  5'- gGGCAGCGGUCGCAGGCGCCGCCUCCGg -3'
miRNA:   3'- -CCGUCGCCAGCGUCCGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 43842 0.67 0.606632
Target:  5'- cGGCcGCGGgccCGUcacAGGCGCC-CCggCCGg -3'
miRNA:   3'- -CCGuCGCCa--GCG---UCCGCGGcGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 44077 0.8 0.101515
Target:  5'- gGGCAGCagacGGU-GCAGGCGCCGCCgCCa -3'
miRNA:   3'- -CCGUCG----CCAgCGUCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 46089 0.76 0.191795
Target:  5'- -cCGGC-GUCGCAGaccuuguaGCGCCGCCUCCGg -3'
miRNA:   3'- ccGUCGcCAGCGUC--------CGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 46573 0.66 0.681424
Target:  5'- aGCGGUGGUUGCGGuaGCC-CUUCUu -3'
miRNA:   3'- cCGUCGCCAGCGUCcgCGGcGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.