miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 239459 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 37415 0.66 0.653453
Target:  5'- gGGCcugaccguGUGG-CGC-GGCGCCgaGCCUCUGa -3'
miRNA:   3'- -CCGu-------CGCCaGCGuCCGCGG--CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 129285 0.66 0.679567
Target:  5'- uGGuCAGCuuguugaGGUCGUGGaacuugauggcguGCGCCGCCgCCGc -3'
miRNA:   3'- -CC-GUCG-------CCAGCGUC-------------CGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 52792 0.66 0.653453
Target:  5'- aGGCGGCGGU-GC-GGCuccaccugGaCCGCCUUCa -3'
miRNA:   3'- -CCGUCGCCAgCGuCCG--------C-GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 123143 0.66 0.672126
Target:  5'- cGGCAGCGG-CGCgucggaaaagaaGGGCcggcgcaCCGUCUCgCGg -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGc------GGCGGAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 46573 0.66 0.681424
Target:  5'- aGCGGUGGUUGCGGuaGCC-CUUCUu -3'
miRNA:   3'- cCGUCGCCAGCGUCcgCGGcGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 165889 0.66 0.668398
Target:  5'- gGGCGGCGGguacaccaccccgCGCugccGGGCcgacuccaccGCCGCCaCCGu -3'
miRNA:   3'- -CCGUCGCCa------------GCG----UCCG----------CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 218089 0.66 0.653453
Target:  5'- aGGCGGCGG-CGCcggugacgaugaGGGCGUagaGCCcgCUGu -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGCGg--CGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 218631 0.66 0.644093
Target:  5'- cGCGGCGGUaagcggccacgGCcGGCGgCGCCUCg- -3'
miRNA:   3'- cCGUCGCCAg----------CGuCCGCgGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 92085 0.66 0.681424
Target:  5'- gGGuCGGgGGgugCGCAgGGCGgUGCC-CCGg -3'
miRNA:   3'- -CC-GUCgCCa--GCGU-CCGCgGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 163186 0.66 0.6628
Target:  5'- cGGCAGCGGacacggUGguGGCGgCgGCagcggcaguagCUCCGg -3'
miRNA:   3'- -CCGUCGCCa-----GCguCCGC-GgCG-----------GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 88068 0.66 0.681424
Target:  5'- cGCGGUGGUCgGC-GGCGCcCGUgaCCa -3'
miRNA:   3'- cCGUCGCCAG-CGuCCGCG-GCGgaGGc -5'
14644 5' -64.3 NC_003521.1 + 38477 0.66 0.681424
Target:  5'- uGGCGGUGGgCGCcGGCGUUcuuacucgaGCC-CCGa -3'
miRNA:   3'- -CCGUCGCCaGCGuCCGCGG---------CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 98960 0.66 0.690689
Target:  5'- uGGUGGCGGcuaGCGacGGCGgCGCCUUUa -3'
miRNA:   3'- -CCGUCGCCag-CGU--CCGCgGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 101818 0.66 0.653453
Target:  5'- aGGgGGCGGUCGCGGuaG--GCCUCgGg -3'
miRNA:   3'- -CCgUCGCCAGCGUCcgCggCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 129215 0.66 0.672126
Target:  5'- uGGCGcGUGGUgGgCAguccGGCGCCGCUggCCa -3'
miRNA:   3'- -CCGU-CGCCAgC-GU----CCGCGGCGGa-GGc -5'
14644 5' -64.3 NC_003521.1 + 153457 0.66 0.679567
Target:  5'- aGGcCAGCGGcUCGCAGGCcacguacacgcggauGCcCuugccgcgcagcugcGCCUCCa -3'
miRNA:   3'- -CC-GUCGCC-AGCGUCCG---------------CG-G---------------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 118921 0.66 0.681424
Target:  5'- cGGCGccGCGG-CGUGGGCGgCgGCgUCCc -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGC-GgCGgAGGc -5'
14644 5' -64.3 NC_003521.1 + 136693 0.66 0.691613
Target:  5'- aGCagGGCGGgcccgaGCAGGaCGCCGCCgaggauggcagcgcgCCGc -3'
miRNA:   3'- cCG--UCGCCag----CGUCC-GCGGCGGa--------------GGC- -5'
14644 5' -64.3 NC_003521.1 + 134503 0.66 0.672126
Target:  5'- uGGCGGauGagGCAGGCgaugcgcacgGCCGCCgCCu -3'
miRNA:   3'- -CCGUCgcCagCGUCCG----------CGGCGGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.