miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 87076 0.66 0.644093
Target:  5'- aGGCGGCGG-CGUAGGgGuuGaggUCCa -3'
miRNA:   3'- -CCGUCGCCaGCGUCCgCggCgg-AGGc -5'
14644 5' -64.3 NC_003521.1 + 211457 0.66 0.653453
Target:  5'- gGGUAccGCGGcCGCGGGU-UCGCaCUCCGu -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGcGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 34426 0.66 0.644093
Target:  5'- gGGCGucGCGGUgcgacuccaCGUAGGCGCUGCgggCCu -3'
miRNA:   3'- -CCGU--CGCCA---------GCGUCCGCGGCGga-GGc -5'
14644 5' -64.3 NC_003521.1 + 63147 0.66 0.643156
Target:  5'- aGCAGCuG-CGCGGGCugacgaucgacgcGCCGCC-CCa -3'
miRNA:   3'- cCGUCGcCaGCGUCCG-------------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 196414 0.66 0.646902
Target:  5'- gGGCAGCGGcacagacagucgcugUCGCccGGGUcgGCCGgcugccgcgcgaaCCUCCGc -3'
miRNA:   3'- -CCGUCGCC---------------AGCG--UCCG--CGGC-------------GGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 6374 0.66 0.644093
Target:  5'- cGGUcGgGGUCGCggagGGGCGCCGCagCUa -3'
miRNA:   3'- -CCGuCgCCAGCG----UCCGCGGCGgaGGc -5'
14644 5' -64.3 NC_003521.1 + 226358 0.66 0.644093
Target:  5'- gGGUAGCGc-CGCGGGagcggcggcugaCGCCGCCgcagggCCGu -3'
miRNA:   3'- -CCGUCGCcaGCGUCC------------GCGGCGGa-----GGC- -5'
14644 5' -64.3 NC_003521.1 + 75982 0.66 0.653453
Target:  5'- aGG-AGCGGcccUCGcCGGGCGCCGUCagCa -3'
miRNA:   3'- -CCgUCGCC---AGC-GUCCGCGGCGGagGc -5'
14644 5' -64.3 NC_003521.1 + 101818 0.66 0.653453
Target:  5'- aGGgGGCGGUCGCGGuaG--GCCUCgGg -3'
miRNA:   3'- -CCgUCGCCAGCGUCcgCggCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 37415 0.66 0.653453
Target:  5'- gGGCcugaccguGUGG-CGC-GGCGCCgaGCCUCUGa -3'
miRNA:   3'- -CCGu-------CGCCaGCGuCCGCGG--CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 57004 0.66 0.644093
Target:  5'- uGGCcGCGGUCaCGGaCGCCGCCaCgCGg -3'
miRNA:   3'- -CCGuCGCCAGcGUCcGCGGCGGaG-GC- -5'
14644 5' -64.3 NC_003521.1 + 52792 0.66 0.653453
Target:  5'- aGGCGGCGGU-GC-GGCuccaccugGaCCGCCUUCa -3'
miRNA:   3'- -CCGUCGCCAgCGuCCG--------C-GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 239043 0.66 0.653453
Target:  5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3'
miRNA:   3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 218631 0.66 0.644093
Target:  5'- cGCGGCGGUaagcggccacgGCcGGCGgCGCCUCg- -3'
miRNA:   3'- cCGUCGCCAg----------CGuCCGCgGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 146900 0.66 0.653453
Target:  5'- gGGCAGCGGU---AGuCGCCGCUUgCCGc -3'
miRNA:   3'- -CCGUCGCCAgcgUCcGCGGCGGA-GGC- -5'
14644 5' -64.3 NC_003521.1 + 213949 0.66 0.644093
Target:  5'- aGGCAgagacGCGG--GUGGGCGCCGgCUCgGg -3'
miRNA:   3'- -CCGU-----CGCCagCGUCCGCGGCgGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 218089 0.66 0.653453
Target:  5'- aGGCGGCGG-CGCcggugacgaugaGGGCGUagaGCCcgCUGu -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGCGg--CGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 52687 0.66 0.690689
Target:  5'- cGGCAGC-GUCgGC-GGUGCCaGCCgcUCCa -3'
miRNA:   3'- -CCGUCGcCAG-CGuCCGCGG-CGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 142239 0.66 0.644093
Target:  5'- cGCuGCGcUCGCGGGC-CCGCUccUCCu -3'
miRNA:   3'- cCGuCGCcAGCGUCCGcGGCGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 69272 0.66 0.645029
Target:  5'- uGGCaAGCGGUcuguuuaaccagcgCGCAgccccgacacagggcGGCGCCGuCCUCg- -3'
miRNA:   3'- -CCG-UCGCCA--------------GCGU---------------CCGCGGC-GGAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.