miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 99004 0.75 0.228751
Target:  5'- aGGUAccGCGGUCGUcuuguagacgauGGCGCCGgCUCCGg -3'
miRNA:   3'- -CCGU--CGCCAGCGu-----------CCGCGGCgGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 152746 0.75 0.234944
Target:  5'- uGGCccGUGGUCaCGGGCGCCGCCgaccaCCGc -3'
miRNA:   3'- -CCGu-CGCCAGcGUCCGCGGCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 6406 0.74 0.245577
Target:  5'- cGCGGCGG-CGaCGGGUcuuGCCGCCUCgGg -3'
miRNA:   3'- cCGUCGCCaGC-GUCCG---CGGCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 219151 0.74 0.245577
Target:  5'- aGGCAG-GGUaccaGCAGGCGCCGCagcguguUCCa -3'
miRNA:   3'- -CCGUCgCCAg---CGUCCGCGGCGg------AGGc -5'
14644 5' -64.3 NC_003521.1 + 150674 0.74 0.251043
Target:  5'- cGGCGGCGG-CGCcgcugcugcuGGGUGCUGCUgcgCCGg -3'
miRNA:   3'- -CCGUCGCCaGCG----------UCCGCGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 223741 0.74 0.251043
Target:  5'- cGGUGGCGGgaaCGUGGGuCGCCGCCagCGg -3'
miRNA:   3'- -CCGUCGCCa--GCGUCC-GCGGCGGagGC- -5'
14644 5' -64.3 NC_003521.1 + 146728 0.74 0.251043
Target:  5'- gGGgAGgGGUUGUuGcGCGUCGCCUCCGg -3'
miRNA:   3'- -CCgUCgCCAGCGuC-CGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 77718 0.74 0.26804
Target:  5'- cGGCGGUGGUCGU-GGCGCUGgCgcCCGa -3'
miRNA:   3'- -CCGUCGCCAGCGuCCGCGGCgGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 235285 0.74 0.26804
Target:  5'- uGGCGGCGGcCGCGccGGCuGCCGUCaCCGu -3'
miRNA:   3'- -CCGUCGCCaGCGU--CCG-CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 118623 0.74 0.26804
Target:  5'- aGGCAGCauggaGUCGCgaGGGCGUCGCCagcCCGa -3'
miRNA:   3'- -CCGUCGc----CAGCG--UCCGCGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 172386 0.74 0.273909
Target:  5'- cGGCAcGCGGUUGagGGGCGCCGgCggagCCGu -3'
miRNA:   3'- -CCGU-CGCCAGCg-UCCGCGGCgGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 167651 0.74 0.273909
Target:  5'- cGGcCAGCuccgcgccaGGUCGCAggccgaggcGGCGCCGCCgCCGc -3'
miRNA:   3'- -CC-GUCG---------CCAGCGU---------CCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 178960 0.73 0.279278
Target:  5'- cGUGGUGGUCGUcauggacAGGCGCCGCggUUCCGc -3'
miRNA:   3'- cCGUCGCCAGCG-------UCCGCGGCG--GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 135372 0.73 0.279278
Target:  5'- cGCGGCGGUuaucgccCGCGGGCGCCaaaCCgugCCGa -3'
miRNA:   3'- cCGUCGCCA-------GCGUCCGCGGc--GGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 204735 0.73 0.292132
Target:  5'- uGGCgagGGUGGUgaUGgAGGCGCCGCCgCCGc -3'
miRNA:   3'- -CCG---UCGCCA--GCgUCCGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 122721 0.73 0.292132
Target:  5'- aGGCGGUcguGGUCGUGGGCGacggCGCCgCCGa -3'
miRNA:   3'- -CCGUCG---CCAGCGUCCGCg---GCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 70381 0.73 0.292132
Target:  5'- aGGCGGCGGUagagguaGCGGGCGUCGUagcgUUCGa -3'
miRNA:   3'- -CCGUCGCCAg------CGUCCGCGGCGg---AGGC- -5'
14644 5' -64.3 NC_003521.1 + 122532 0.73 0.292132
Target:  5'- cGGCGGCGGUgGUAGuGCuGCUGCUaCCGc -3'
miRNA:   3'- -CCGUCGCCAgCGUC-CG-CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 49578 0.73 0.292132
Target:  5'- cGC-GUGGgcCGC-GGCGCCGCCUCCu -3'
miRNA:   3'- cCGuCGCCa-GCGuCCGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 85111 0.73 0.298414
Target:  5'- cGGCGGCGGcagCgGCGGGCgGCacguaGCCUCCc -3'
miRNA:   3'- -CCGUCGCCa--G-CGUCCG-CGg----CGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.