miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 5540 0.73 0.3048
Target:  5'- cGGCAGcCGG-CGCGGcCGCCGCCaucguuguUCCGu -3'
miRNA:   3'- -CCGUC-GCCaGCGUCcGCGGCGG--------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 186658 0.73 0.3048
Target:  5'- cGCGGCGGUgGCggAGGCgGCgGCCUCUc -3'
miRNA:   3'- cCGUCGCCAgCG--UCCG-CGgCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 87765 0.73 0.3048
Target:  5'- cGGCGGCGGagGaggccuGGGgGCCGCCUCg- -3'
miRNA:   3'- -CCGUCGCCagCg-----UCCgCGGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 101504 0.73 0.307383
Target:  5'- aGCGGCGGcCagacgcggccgaccaGCAGGCGCUGCagCUCCGu -3'
miRNA:   3'- cCGUCGCCaG---------------CGUCCGCGGCG--GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 166485 0.73 0.31129
Target:  5'- cGCAGCaG-CGCcauccagcgGGGCGCCGCgUCCGa -3'
miRNA:   3'- cCGUCGcCaGCG---------UCCGCGGCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 137163 0.72 0.317885
Target:  5'- uGGCcGCGGcCGCAGcG-GCCGCCgCCGa -3'
miRNA:   3'- -CCGuCGCCaGCGUC-CgCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 55918 0.72 0.323909
Target:  5'- cGGCGGCGGcaaCGgGGGUGCCagcgggguaugagGCCUCUGu -3'
miRNA:   3'- -CCGUCGCCa--GCgUCCGCGG-------------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 212231 0.72 0.324584
Target:  5'- uGGUGGCGGUgCGCAGcaGC-CCGCCgUCCGc -3'
miRNA:   3'- -CCGUCGCCA-GCGUC--CGcGGCGG-AGGC- -5'
14644 5' -64.3 NC_003521.1 + 119334 0.72 0.324584
Target:  5'- cGCAcGCGGUCggGCAGGgGuCCGgCCUCCa -3'
miRNA:   3'- cCGU-CGCCAG--CGUCCgC-GGC-GGAGGc -5'
14644 5' -64.3 NC_003521.1 + 234133 0.72 0.324584
Target:  5'- aGCAGCGcUCGCGGGCGCagGCC-CUGc -3'
miRNA:   3'- cCGUCGCcAGCGUCCGCGg-CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 181207 0.72 0.324584
Target:  5'- aGCcGCGGUCGCcgccGGgGCCGCCgCCa -3'
miRNA:   3'- cCGuCGCCAGCGu---CCgCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 130347 0.72 0.330703
Target:  5'- gGGCucaacguGCGGcCGCAGGCGCCgugcgcgcucagcGCCaCCGg -3'
miRNA:   3'- -CCGu------CGCCaGCGUCCGCGG-------------CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 86398 0.72 0.331388
Target:  5'- gGGcCAGCGGUcgaCGCGGGgGacgcgcgugcCCGCCUCCu -3'
miRNA:   3'- -CC-GUCGCCA---GCGUCCgC----------GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 117239 0.72 0.331388
Target:  5'- cGCGGCGGcUC-CcGGCGCCGCCgCCa -3'
miRNA:   3'- cCGUCGCC-AGcGuCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 204801 0.72 0.331388
Target:  5'- gGGCcaAGaCGGUCGUGGG-GCCGCCaccUCCGu -3'
miRNA:   3'- -CCG--UC-GCCAGCGUCCgCGGCGG---AGGC- -5'
14644 5' -64.3 NC_003521.1 + 58891 0.72 0.345308
Target:  5'- cGCGGCGaGUCGCA-GC-CCGUCUCCa -3'
miRNA:   3'- cCGUCGC-CAGCGUcCGcGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 125847 0.72 0.345308
Target:  5'- cGCGGUGGUCGUAcagcgccuuGGUgGCCGCgUCCGu -3'
miRNA:   3'- cCGUCGCCAGCGU---------CCG-CGGCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 13859 0.72 0.345308
Target:  5'- cGCGGgGGUCucuGCGGGCGgCGCCgCCa -3'
miRNA:   3'- cCGUCgCCAG---CGUCCGCgGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 98472 0.72 0.352424
Target:  5'- cGGCGGCGGcCGCGgcggccguGGCgGCgGCCUCgCGc -3'
miRNA:   3'- -CCGUCGCCaGCGU--------CCG-CGgCGGAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 209089 0.72 0.352424
Target:  5'- aGGCGGCGGaggCGguGGcCGCgGCgUCCc -3'
miRNA:   3'- -CCGUCGCCa--GCguCC-GCGgCGgAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.