miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 213949 0.66 0.644093
Target:  5'- aGGCAgagacGCGG--GUGGGCGCCGgCUCgGg -3'
miRNA:   3'- -CCGU-----CGCCagCGUCCGCGGCgGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 197127 0.66 0.644093
Target:  5'- gGGUGGgGGUCGUuGuCGUCGUCUCCu -3'
miRNA:   3'- -CCGUCgCCAGCGuCcGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 38816 0.66 0.653453
Target:  5'- cGGaccUGGUCGC-GGCGCCGUgUUCCGa -3'
miRNA:   3'- -CCgucGCCAGCGuCCGCGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 106309 0.66 0.644093
Target:  5'- aGGCGGCGGcCGU--GCGCauCGCCUgCCu -3'
miRNA:   3'- -CCGUCGCCaGCGucCGCG--GCGGA-GGc -5'
14644 5' -64.3 NC_003521.1 + 104091 0.66 0.672126
Target:  5'- cGGCAggacGCGGaagGCGGcGCGCUGCCagUCCu -3'
miRNA:   3'- -CCGU----CGCCag-CGUC-CGCGGCGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 165889 0.66 0.668398
Target:  5'- gGGCGGCGGguacaccaccccgCGCugccGGGCcgacuccaccGCCGCCaCCGu -3'
miRNA:   3'- -CCGUCGCCa------------GCG----UCCG----------CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 218089 0.66 0.653453
Target:  5'- aGGCGGCGG-CGCcggugacgaugaGGGCGUagaGCCcgCUGu -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGCGg--CGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 119084 0.66 0.681424
Target:  5'- gGGCaAGCaGGUgugGCAGGCGC-GCCUgaCCGu -3'
miRNA:   3'- -CCG-UCG-CCAg--CGUCCGCGgCGGA--GGC- -5'
14644 5' -64.3 NC_003521.1 + 118921 0.66 0.681424
Target:  5'- cGGCGccGCGG-CGUGGGCGgCgGCgUCCc -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGC-GgCGgAGGc -5'
14644 5' -64.3 NC_003521.1 + 52687 0.66 0.690689
Target:  5'- cGGCAGC-GUCgGC-GGUGCCaGCCgcUCCa -3'
miRNA:   3'- -CCGUCGcCAG-CGuCCGCGG-CGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 39231 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 117485 0.66 0.672126
Target:  5'- cGGCcGCGG-CGCuGGgGCCGUCggugUUCGg -3'
miRNA:   3'- -CCGuCGCCaGCGuCCgCGGCGG----AGGC- -5'
14644 5' -64.3 NC_003521.1 + 77124 0.66 0.672126
Target:  5'- cGGCcucGUGGcCGCcguuGGCGCCGCuCUUgGa -3'
miRNA:   3'- -CCGu--CGCCaGCGu---CCGCGGCG-GAGgC- -5'
14644 5' -64.3 NC_003521.1 + 153457 0.66 0.679567
Target:  5'- aGGcCAGCGGcUCGCAGGCcacguacacgcggauGCcCuugccgcgcagcugcGCCUCCa -3'
miRNA:   3'- -CC-GUCGCC-AGCGUCCG---------------CG-G---------------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 211457 0.66 0.653453
Target:  5'- gGGUAccGCGGcCGCGGGU-UCGCaCUCCGu -3'
miRNA:   3'- -CCGU--CGCCaGCGUCCGcGGCG-GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 163186 0.66 0.6628
Target:  5'- cGGCAGCGGacacggUGguGGCGgCgGCagcggcaguagCUCCGg -3'
miRNA:   3'- -CCGUCGCCa-----GCguCCGC-GgCG-----------GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 132599 0.66 0.671194
Target:  5'- aGCGGCGG-CGUcGGCGUCcgcaacgGCUUCCa -3'
miRNA:   3'- cCGUCGCCaGCGuCCGCGG-------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 134503 0.66 0.672126
Target:  5'- uGGCGGauGagGCAGGCgaugcgcacgGCCGCCgCCu -3'
miRNA:   3'- -CCGUCgcCagCGUCCG----------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 239459 0.66 0.681424
Target:  5'- gGGaCAGCGGUgGCccgcGGCGCguucaGCCccagCCGg -3'
miRNA:   3'- -CC-GUCGCCAgCGu---CCGCGg----CGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 146900 0.66 0.653453
Target:  5'- gGGCAGCGGU---AGuCGCCGCUUgCCGc -3'
miRNA:   3'- -CCGUCGCCAgcgUCcGCGGCGGA-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.