miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 169316 0.72 0.352424
Target:  5'- cGGCGuCGGUCGCA-GCGUCGCggCCGg -3'
miRNA:   3'- -CCGUcGCCAGCGUcCGCGGCGgaGGC- -5'
14644 5' -64.3 NC_003521.1 + 240038 0.72 0.359643
Target:  5'- gGGCgccgGGCGGUccucCGCcgauGGCGCCugcuugGCCUCCGg -3'
miRNA:   3'- -CCG----UCGCCA----GCGu---CCGCGG------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 39811 0.72 0.359643
Target:  5'- gGGCgccgGGCGGUccucCGCcgauGGCGCCugcuugGCCUCCGg -3'
miRNA:   3'- -CCG----UCGCCA----GCGu---CCGCGG------CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 39464 0.72 0.359643
Target:  5'- cGGCAGCGGuUCGUGucccGuCGCCGCCUCg- -3'
miRNA:   3'- -CCGUCGCC-AGCGUc---C-GCGGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 239691 0.72 0.359643
Target:  5'- cGGCAGCGGuUCGUGucccGuCGCCGCCUCg- -3'
miRNA:   3'- -CCGUCGCC-AGCGUc---C-GCGGCGGAGgc -5'
14644 5' -64.3 NC_003521.1 + 110871 0.71 0.366228
Target:  5'- aGCAGCGGccCGCGGcagaacuGCGCCGUCUCgGc -3'
miRNA:   3'- cCGUCGCCa-GCGUC-------CGCGGCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 219792 0.71 0.366965
Target:  5'- aGCGGUGGaucUCGCcguGGCGuuacCCGCCUCCa -3'
miRNA:   3'- cCGUCGCC---AGCGu--CCGC----GGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 90156 0.71 0.366965
Target:  5'- aGCAGCGGcgccgcCGCcGGagaGCCGCCUUCGu -3'
miRNA:   3'- cCGUCGCCa-----GCGuCCg--CGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 115393 0.71 0.366965
Target:  5'- uGCAG-GG-CGCGGGCgGCCGCCacggccUCCGg -3'
miRNA:   3'- cCGUCgCCaGCGUCCG-CGGCGG------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 165485 0.71 0.366965
Target:  5'- uGGUAGUcGUCGCGGGcCGCCGUCagcaUCUGg -3'
miRNA:   3'- -CCGUCGcCAGCGUCC-GCGGCGG----AGGC- -5'
14644 5' -64.3 NC_003521.1 + 132441 0.71 0.374388
Target:  5'- uGGUAGCGGUgGUGGGCuguucGgCGCgUCCGg -3'
miRNA:   3'- -CCGUCGCCAgCGUCCG-----CgGCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 119625 0.71 0.374388
Target:  5'- aGGUGGacguuuacccacUGGcCGCGGGCGuCCGUCUCCGc -3'
miRNA:   3'- -CCGUC------------GCCaGCGUCCGC-GGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 166222 0.71 0.381156
Target:  5'- cGGCGGCgaggcgcgccGGcCGCGGGaCGCCGCgccgccgCUCCGu -3'
miRNA:   3'- -CCGUCG----------CCaGCGUCC-GCGGCG-------GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 160334 0.71 0.381913
Target:  5'- gGGCGGCGcgguggccuccGUCGUcgaGGGCGUCGCCgCCu -3'
miRNA:   3'- -CCGUCGC-----------CAGCG---UCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 76225 0.71 0.38724
Target:  5'- uGGCGGCGGcCGguGGCGUggcgguuacugucuCGCCagcaCCGg -3'
miRNA:   3'- -CCGUCGCCaGCguCCGCG--------------GCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 110818 0.71 0.389538
Target:  5'- -cCAGCGGcCGUuGcGCGCCGCCgCCGg -3'
miRNA:   3'- ccGUCGCCaGCGuC-CGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 124112 0.71 0.392616
Target:  5'- aGCAGCGcGUCGCuGuggugauucccgcccGCGCCgcuGCCUCCGc -3'
miRNA:   3'- cCGUCGC-CAGCGuC---------------CGCGG---CGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 167046 0.71 0.397262
Target:  5'- gGGCAGCGG-CGU-GGCGCucaugaCGCCggugCCGg -3'
miRNA:   3'- -CCGUCGCCaGCGuCCGCG------GCGGa---GGC- -5'
14644 5' -64.3 NC_003521.1 + 109756 0.7 0.410616
Target:  5'- aGCcGCGGUCGCcgccaccgcguccgAGGCccGCCGCCgCCGc -3'
miRNA:   3'- cCGuCGCCAGCG--------------UCCG--CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 26886 0.7 0.413001
Target:  5'- uGGC-GCGGa-GCAGGUGaCCGCCgUCCa -3'
miRNA:   3'- -CCGuCGCCagCGUCCGC-GGCGG-AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.